PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15545
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 263aa    MW: 29747.8 Da    PI: 10.0354
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15545genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65.1e-0795129238
                                SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
            Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 
                                 rWT   d+ l++a k +G +  ++ ++ ++ gRt+k
  Tp57577_TGAC_v2_mRNA15545  95 ERWTSNQDKELKEAYKIHGED-YNKLMEVVN-GRTRK 129
                                59*****************99.*********.***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.61E-595138IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-496130IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
KAPRREQGVA EDDPEHYRES KGQSSKQLGP KTPRSYWTAA ENEAFAKARS EIKNITATQL  60
KKNVSELKDR PIDSIKTKMK EHKCVPVSEA IHGGERWTSN QDKELKEAYK IHGEDYNKLM  120
EVVNGRTRKA GYDRIRKYDK ENKVGEQKGS KKVRSLKCQV KTKEKKVDKE KQQMGLETAE  180
AEAEGSELVP GQKGTLAVLT KDCLVAALKQ SEENIIVRSR DMVRDVVREE LQSEPFKILI  240
SNSIAEARGG GSTKSVFGWR NFL
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15545
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3M8W41e-130A0A2K3M8W4_TRIPR; Uncharacterized protein