PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA15526 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 93aa MW: 11142.6 Da PI: 9.273 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 44.7 | 4e-14 | 2 | 79 | 19 | 95 |
DUF260 19 apyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +pyfp + ++f nvh F ++nv + +++ ++ee +++++++l +eA r+ +P++G++ v ++ +q++ +l+a+++ Tp57577_TGAC_v2_mRNA15526 2 RPYFPPGDDANFINVHFTFTNNNVERWITQRETEEqKRNLVRALKWEAGRRLFNPIEGSYTVCMRQRQRITELNAQVQ 79 8*************************99998655549************************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 10.996 | 1 | 85 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-12 | 1 | 79 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
MRPYFPPGDD ANFINVHFTF TNNNVERWIT QRETEEQKRN LVRALKWEAG RRLFNPIEGS 60 YTVCMRQRQR ITELNAQVQF LLMLVDHFNQ QQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA15526 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 2e-11 | LOB domain-containing protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA15526 |