PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15441
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family TCP
Protein Properties Length: 332aa    MW: 36713 Da    PI: 6.2703
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15441genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.13.9e-35211342103
                        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................... 65 
                                +gkkdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+++ak +i++l+++                    
  Tp57577_TGAC_v2_mRNA15441  21 TGKKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGFDRPSKAVDWLIKKAKSSIDKLAKLppwhpigenhtlkpqeeqnv 104
                                79**************************************************************76654444443332222222 PP

                        TCP  66 ....ssssaseceaesssssasnsssg.........kaaksaakskksqks 103
                                    +                     g         +  +++  s+ s+++
  Tp57577_TGAC_v2_mRNA15441 105 aadtT---------------------GmaigessesNGYSFHLLSQLSENQ 134
                                22220.....................1223322222333333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.5E-3221224IPR005333Transcription factor, TCP
PROSITE profilePS5136932.292381IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MRSTTGGEIV QVEGGHIVRS TGKKDRHSKV YTSKGPRDRR VRLSAHTAIE FYDVQDRLGF  60
DRPSKAVDWL IKKAKSSIDK LAKLPPWHPI GENHTLKPQE EQNVAADTTG MAIGESSESN  120
GYSFHLLSQL SENQVNSSSF ISPHDVETNP IPFFPTTSST SSSINFQNYP SENLGLSLHS  180
FQDHNGFIPW QSQQVCENNE TSDVNQNQAL FENQYQRIVN WNNETTNDYI KKVGFMVNSN  240
PFLGQGSYSG SEYSPNETLE SNFSHSVRTW NEIPMAASSS EVHHHRSQQA SIFGNRFGSD  300
GLAGFCVADT VQGGEEGHGV SSNRLSSPNN N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-212881154Putative transcription factor PCF6
5zkt_B1e-212881154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15441
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1448930.0AC144893.15 Medicago truncatula clone mth2-29d23, complete sequence.
GenBankAC1716190.0AC171619.9 Medicago truncatula clone mth2-160a1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607555.10.0transcription factor TCP10
TrEMBLA0A2K3PR610.0A0A2K3PR61_TRIPR; Transcription factor PCF5
STRINGAES847770.0(Medicago truncatula)
STRINGAES897520.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.33e-48TCP family protein