PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA15327 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | B3 | ||||||||
Protein Properties | Length: 238aa MW: 27833 Da PI: 9.7247 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35 | 2.4e-11 | 25 | 119 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+ +l+p +++ + + +p +f +e+ +k + t t+ + ++vk+++++ +r ++t+GW+ F + +L+++D++ F++ Tp57577_TGAC_v2_mRNA15327 25 FQLKLSPCYAHGTF-MKIPSEFSREYLNKF-K-GTATISVGRDVAMKVKMKFDNIYRRSIITTGWNLFNQRYNLQANDICYFEM 105 56667666666666.99*********5442.3.378888999999*****999999999************************7 PP -SSSEE..EEEEE- CS B3 85 dgrsefelvvkvfr 98 ++ + ++ +++fr Tp57577_TGAC_v2_mRNA15327 106 TQLQPPSFSITIFR 119 75455555777776 PP | |||||||
2 | B3 | 47.1 | 4.2e-15 | 153 | 230 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +p++f+++h + + ++++ + +sW vk+ + ++++ + +GW++F ++ +L+ gD++vF+l+++++f +vv+++rk Tp57577_TGAC_v2_mRNA15327 153 NIPNEFFNRHIDCHGKFVEIK---VDEKSWFVKV--NYYPRGSRFCSGWRKFMEDCKLENGDTCVFELIDDKKFVFVVSIVRK 230 59999*999944444555566...567*******..66666666889*********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.1E-15 | 18 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.0E-14 | 19 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.783 | 24 | 121 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.011 | 25 | 121 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.28E-8 | 25 | 119 | No hit | No description |
Pfam | PF02362 | 8.1E-9 | 33 | 119 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.096 | 137 | 231 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.93E-13 | 140 | 229 | No hit | No description |
SMART | SM01019 | 1.8E-9 | 142 | 231 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.8E-17 | 144 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-15 | 147 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.6E-12 | 154 | 230 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MVKKAKDRPL TETVNERANS ENPWFQLKLS PCYAHGTFMK IPSEFSREYL NKFKGTATIS 60 VGRDVAMKVK MKFDNIYRRS IITTGWNLFN QRYNLQANDI CYFEMTQLQP PSFSITIFRA 120 IENSSPKKLQ DSEDHNVVKP KTFKLLVNDS YPNIPNEFFN RHIDCHGKFV EIKVDEKSWF 180 VKVNYYPRGS RFCSGWRKFM EDCKLENGDT CVFELIDDKK FVFVVSIVRK KEKPSGI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA15327 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004498233.1 | 6e-74 | B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A1S2Y2C9 | 1e-72 | A0A1S2Y2C9_CICAR; B3 domain-containing transcription factor VRN1-like | ||||
STRING | XP_004498233.1 | 2e-73 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11472 | 6 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 3e-10 | related to vernalization1 1 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA15327 |