PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA15279

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 220aa MW: 24706.8 Da PI: 7.543

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA15279	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.7	3.3e-17	31	109	10	91
FAR1 10 vGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 GF +rk++ ++ ++++i+ r++vC++ gk+++++ + + +++trt+C a+l+v+++ ++kw v +e HnH+l+p Tp57577_TGAC_v2_mRNA15279 31 HGFAIRKDYVRRD-DDDKIVVRQLVCNRAGKNSKKEGR---GKVLKMNTRTDCPARLQVNLNVeTDKWTVFAFEPCHNHPLMP 109 59*****9998.6666**********998766...99999************99**************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-14	31	109	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MAANDGDING EELASGNNVV NEEGKEDMEF HGFAIRKDYV RRDDDDKIVV RQLVCNRAGK 60 NSKKEGRGKV LKMNTRTDCP ARLQVNLNVE TDKWTVFAFE PCHNHPLMPT RYVHLIPKYR 120 RLSGSDKALV DGLHTQGVRT CHILGFMLAQ KGGYENLGFG KNDLYNYLNN QERATIEGGD 180 AFASLSYLQA KADNDPMFFS KFTTTEDGPF TKFILGRFS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA15279

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029126074.1	4e-58	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2Z6MVW6	7e-77	A0A2Z6MVW6_TRISU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3290	7	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-20	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA15279