PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15240
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 520aa    MW: 57880.9 Da    PI: 7.2153
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15240genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.91.6e-17327373455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 hn  ErrRRdriN+++  L++l+P++      K +Ka++Le+A++Y+ksLq
  Tp57577_TGAC_v2_mRNA15240 327 VHNLSERRRRDRINEKMKALQQLIPHS-----SKTDKASMLEEAIDYLKSLQ 373
                                6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.4E-19320381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-20321389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.571323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.77E-18326377No hitNo description
PfamPF000105.1E-15327373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-19329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MNNTFPEWNF GSDTFVANQK KQPMGLDHEL VELLWHNGQV VLHSQTNKKP LVNTTSNTSR  60
QVHKNLQSTT LSNLIQADET VSWIQQFPLE DPLEQELCSN LLNELPPCDV ESYNSQTTNT  120
KPSFVEEFSG IPMPAPRFHH HVSDSSQRNN DLCGTNKVVN FSHFSRLPNV SLATSNGDDA  180
KFRDKITGNL SQCDIRECST MTVGSSYCGS NHVQQDPDVS RVSSNGVWTT ISTEPEIIKG  240
DVHKTIPRHE KGKSEMLEPV VTSSSGGSGS SLGKTCSLST RSHGQKRKEI DVEDSVEQSE  300
DTEFKPAVRK KVSQKSGSAR RNRAAEVHNL SERRRRDRIN EKMKALQQLI PHSSKTDKAS  360
MLEEAIDYLK SLQLQLQVMW MGSGMQPMML PGFQQYMSQM SMGMTTPSFP SIQNPMQVPR  420
MPLDPSVSSP QTPNQTLMCQ NPLLGAFNYQ NQIQNPALSE QYARYMGYHL MQNASQPMNM  480
YRYGPQTVQN SQTMIPTSNS SGPMNGAANI NDALSGKMG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331336ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15240
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013459610.10.0transcription factor PIF4 isoform X1
TrEMBLA0A2K3P2D80.0A0A2K3P2D8_TRIPR; Transcription factor PIF5-like protein
STRINGXP_004499538.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.21e-57phytochrome interacting factor 4