PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15220
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NF-YA
Protein Properties Length: 321aa    MW: 35350.1 Da    PI: 9.5117
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15220genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.71.6e-32158214158
                  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                +ep+YVNaKQyq+Il+RRq+Rak+e e+kl +ksrkpylheSRh+hA+rR+Rg+gGrF
  Tp57577_TGAC_v2_mRNA15220 158 QEPVYVNAKQYQGILRRRQARAKAELERKL-IKSRKPYLHESRHQHAMRRARGTGGRF 214
                                69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.9E-36156217IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.925157217IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.8E-28159214IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.6E-24160182IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860162182IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.6E-24191214IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MQPKSETANQ LRSDPHSFQP SGVYSEPWWR GVGYNPVAQS KSXXXXXXXX XXXXXMPLRI  60
HSLLLLISQY FLFSVGNYGQ DQQGMQNAAS SALTIREECL THTPQLELVG HSIACATNPY  120
QDPYYGGMMA AYGHQPLGYP PFIGMPHARM PLPLEMAQEP VYVNAKQYQG ILRRRQARAK  180
AELERKLIKS RKPYLHESRH QHAMRRARGT GGRFAKKTDG EGSNSGKDNG SGPVLSSQSI  240
SSSGSEPLPS DSAETWNSPN MRQDARASNE NGGGSYHSNN NGMQSSRYQG ERVDDGGDCS  300
GQLRGSMSSN EASQRRLAIQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A9e-19158214258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15220
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182700.0JQ918270.1 Medicago truncatula nuclear transcription factor Y subunit A5 (NF-YA5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500196.11e-172nuclear transcription factor Y subunit A-1
RefseqXP_004500197.11e-172nuclear transcription factor Y subunit A-1
RefseqXP_027190579.11e-172nuclear transcription factor Y subunit A-1
SwissprotQ945M93e-72NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLA0A2K3PQI30.0A0A2K3PQI3_TRIPR; Nuclear transcription factor Y subunit A-1-like protein
STRINGXP_004500195.11e-172(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40123461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.11e-69nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]