PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA1519 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 226aa MW: 24397.9 Da PI: 8.4886 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 84.6 | 1.4e-26 | 4 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C++C+vlr++C+++C++ p++ +++q +++ +++k++G++ +l+ll+++p+++ e++++sl+yeA r+ +P yGa+g++ Tp57577_TGAC_v2_mRNA1519 4 SCNGCRVLRKGCSEGCIIKPCLewissAQAQGHATLFLAKFYGRTGLLNLLANAPNQNAEAVFKSLLYEAAGRLVNPTYGALGLF 88 6*********************9998777889***************************************************** PP DUF260 81 lklqqqleqlkaelallkee 100 +++q+ +++++e +l++++ Tp57577_TGAC_v2_mRNA1519 89 WTGQWSRCEAAVESVLTRSN 108 ************99998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.85 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-22 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MKLSCNGCRV LRKGCSEGCI IKPCLEWISS AQAQGHATLF LAKFYGRTGL LNLLANAPNQ 60 NAEAVFKSLL YEAAGRLVNP TYGALGLFWT GQWSRCEAAV ESVLTRSNIN DVIAVDGQTS 120 SGTLIAENHV LPTNSDIRHV ARGTNVDIKE KTQFKRAGSI FKPKPRIGLA NNATLLKSIL 180 ENDIVTTVET SSMIEKELNE AAETQVNLEL TLGFNCQSSN GKKII* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA1519 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013470179.1 | 1e-117 | LOB domain-containing protein 42 | ||||
Swissprot | Q9ZW96 | 2e-50 | LBD40_ARATH; LOB domain-containing protein 40 | ||||
TrEMBL | A0A2K3LWV0 | 1e-163 | A0A2K3LWV0_TRIPR; LOB domain-containing protein | ||||
STRING | AES84556 | 1e-116 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14785 | 6 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67100.1 | 2e-46 | LOB domain-containing protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA1519 |