PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15152
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 382aa    MW: 43259.4 Da    PI: 4.9224
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15152genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.54.2e-26188247159
                                ---SS-EEEEEEE--TT-S.S-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   1 ldDgynWrKYGqKevkgse.fprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                ldDgy+W+KYG+K vkg++ +pr+YYrCt+++C  +k+ver+a+ p++v++ Yeg+Hnh+
  Tp57577_TGAC_v2_mRNA15152 188 LDDGYHWQKYGRKYVKGNPnHPRAYYRCTHRTCDIRKQVERDARYPQFVIVSYEGRHNHK 247
                                59***************9736**************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-27176249IPR003657WRKY domain
SuperFamilySSF1182909.68E-23182249IPR003657WRKY domain
PROSITE profilePS5081128.449183249IPR003657WRKY domain
SMARTSM007743.7E-24188248IPR003657WRKY domain
PfamPF031066.4E-20189247IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MATRGDAEVH ADIEVQQSPE GHDANQDEQV LNMQNDANAM LDIERARKGK MPMIYSEGVC  60
AEETVPVADD EVPNAPLPNG HDANQDEQVV DMQNHDANAM LEIQRARKGK MPMNYSEGVC  120
AEKTVAFYDQ VSTDEEIPNA IADDEESHIG GASPKRKRNM DLSEYYKPPR ARIGPKSVIR  180
VESEEDILDD GYHWQKYGRK YVKGNPNHPR AYYRCTHRTC DIRKQVERDA RYPQFVIVSY  240
EGRHNHKVPG PRQRSRTFTP FTPTVPVVYA DMPPPPPSAT PVTLSFTPFN NPNNKFIHGY  300
RPYNLDFDRP NDSFLNIPHT RPYDFVQPNN SSPGFSLSPP LPPSDGRGFL XXXXXXXXXX  360
XXXXXXXXDE EEEANDVPNN E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-21177250678Probable WRKY transcription factor 4
2lex_A4e-21177250678Probable WRKY transcription factor 4
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15152
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3NFN40.0A0A2K3NFN4_TRIPR; WRKY transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2121434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.14e-26WRKY DNA-binding protein 3