PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA1515 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | CO-like | ||||||||
Protein Properties | Length: 438aa MW: 48926.4 Da PI: 5.1365 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 28.6 | 3e-09 | 17 | 60 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + k+++++C ++ +lC+ C ++ H+ H++v Tp57577_TGAC_v2_mRNA1515 17 ARACDSCITKRARWYCAADDAFLCQACDSSVHSAnslarrHERV 60 578*****************************657788888876 PP | |||||||
2 | CCT | 68 | 2.5e-23 | 383 | 426 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a Tp57577_TGAC_v2_mRNA1515 383 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 426 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 5.4E-10 | 15 | 62 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.936 | 15 | 62 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.8E-8 | 17 | 60 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.09E-10 | 18 | 62 | No hit | No description |
PROSITE profile | PS51017 | 16.083 | 383 | 425 | IPR010402 | CCT domain |
Pfam | PF06203 | 7.4E-18 | 383 | 425 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MSCSSKKAAN AVGGKTARAC DSCITKRARW YCAADDAFLC QACDSSVHSA NSLARRHERV 60 RLKTASYKST GGDDEFNNSG PFSGFTKKAR TPRQGKNKSS SSNEPARNNN NNPFHLVPEM 120 GFDEVNSLSH DENEEQLLYR VPIFDPFVAE LCSTSPPSVG SSEGGLGTIT IASDTFAPDT 180 KNIRSENRSG SNNYEMESFH GLLPSDIELA EFAADVESLL GRGLENECIG MEELGLIDTK 240 NEKDREWECI GKVKEESEES HEVVEVDNIE MMGKESSFEL NFDYDESHET CEEVKGKVGL 300 DIEQNENNNC NKGKRKISLQ LDYDAIIIAW DSQKCPWTNG DKPNLDADET LLDCMGTYGT 360 EVNYPYGEFG GYGYNPVMVD GGREARVSRY REKRRTRLFS KKIRYEVRKL NAEKRPRMKG 420 RFVKRASFAV PTFPLLK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 393 | 409 | RRTRLFSKKIRYEVRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA1515 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT137311 | 2e-32 | BT137311.1 Medicago truncatula clone JCVI-FLMt-21J5 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013470181.1 | 0.0 | zinc finger protein CONSTANS-LIKE 16 | ||||
TrEMBL | A0A2K3KYI0 | 0.0 | A0A2K3KYI0_TRIPR; Zinc finger protein CONSTANS-like 16-like | ||||
STRING | XP_004497095.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1473 | 33 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 1e-97 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA1515 |