PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15128
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 177aa    MW: 20568.5 Da    PI: 9.7342
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15128genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.11.1e-091964146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                               +g+W+ +Ed +l  +++ +G + W++I +   ++R++  c+ rw k
  Tp57577_TGAC_v2_mRNA15128 19 KGKWSRDEDNILRAYIADHGENKWASIHKVTTLRRSGDACQVRWMK 64
                               79******************************************98 PP
2Myb_DNA-binding44.63.3e-1472114145
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                +g++T+eE +  ++++ qlG + W++I+++++ gRt  +++++w 
  Tp57577_TGAC_v2_mRNA15128  72 KGAFTEEEKKTVIELHDQLGDN-WAAISQKVP-GRTNHDVRHFWK 114
                                799*****************77.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.9611470IPR017930Myb domain
SuperFamilySSF466895.86E-2317113IPR009057Homeodomain-like
SMARTSM007179.6E-101868IPR001005SANT/Myb domain
PfamPF002496.2E-81964IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-182073IPR009057Homeodomain-like
CDDcd001673.04E-72166No hitNo description
SMARTSM007177.9E-1071119IPR001005SANT/Myb domain
PROSITE profilePS5129414.53671121IPR017930Myb domain
PfamPF002494.5E-1372114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-1874116IPR009057Homeodomain-like
CDDcd001674.30E-874115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MFHNFLTDYI LFKMEGFKKG KWSRDEDNIL RAYIADHGEN KWASIHKVTT LRRSGDACQV  60
RWMKRLKPGL KKGAFTEEEK KTVIELHDQL GDNWAAISQK VPGRTNHDVR HFWKRKMGHL  120
DNSSIKFDNK IDNSGIKLDS STVKFPVYEF TYEDPPQLPP GSYVCFFDEV AKFPLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-161711725124MYB TRANSFORMING PROTEIN
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15128
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z6MXU36e-84A0A2Z6MXU3_TRISU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26960.11e-32myb domain protein 81