PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA15106 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 74aa MW: 8588.68 Da PI: 5.5369 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.9 | 6.1e-10 | 20 | 65 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 WT e+ +l+ +a +++ +W+ Ia +++ +++ q+k+++ + Tp57577_TGAC_v2_mRNA15106 20 QWTREDNKLFEKALITVPKHssnRWEEIAGYVP-DKSAAQVKDHYED 65 6**************99999999**********.***********76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.74E-12 | 16 | 67 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-5 | 17 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-6 | 20 | 67 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.2E-8 | 20 | 66 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.073 | 21 | 67 | IPR017877 | Myb-like domain |
CDD | cd00167 | 1.06E-7 | 21 | 67 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 74 aa Download sequence Send to blast |
MHQKTIDMAA AAARTLWPTQ WTREDNKLFE KALITVPKHS SNRWEEIAGY VPDKSAAQVK 60 DHYEDLVHDI LEIE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA15106 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001237360.1 | 7e-19 | syringolide-induced protein 1-3-1A | ||||
Refseq | XP_013470249.1 | 9e-19 | transcription factor DIVARICATA | ||||
Refseq | XP_028184395.1 | 6e-19 | transcription factor DIVARICATA-like | ||||
TrEMBL | A0A392SNG0 | 4e-42 | A0A392SNG0_9FABA; Transcription factor DIVARICATA-like (Fragment) | ||||
STRING | GLYMA10G42450.1 | 3e-18 | (Glycine max) | ||||
STRING | AES84368 | 4e-18 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 1e-16 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA15106 |