PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15091
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 362aa    MW: 40799.5 Da    PI: 9.0781
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15091genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.81.8e-11200240143
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 
                                +g++T  Ede+l  av ++G + W+ Ia++++ gR   qc++r
  Tp57577_TGAC_v2_mRNA15091 200 KGSFTLKEDERLTVAVMLFGRK-WNQIAKYVP-GRIQSQCRDR 240
                                799*****************99.*********.********99 PP
2Myb_DNA-binding41.72.7e-13253290342
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42 
                                 WT++Ed++l  a++++G   W+++a++++  Rt+ qc+ 
  Tp57577_TGAC_v2_mRNA15091 253 GWTEDEDLRLEAAITKYGYC-WSKVAEYVP-LRTDSQCRK 290
                                5*****************99.*********.9******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.76891147IPR017930Myb domain
SMARTSM007173.7E-495145IPR001005SANT/Myb domain
SuperFamilySSF466891.63E-1695191IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-997155IPR009057Homeodomain-like
PfamPF139215.4E-999159No hitNo description
PROSITE profilePS500908.769144195IPR017877Myb-like domain
SMARTSM007170.35148197IPR001005SANT/Myb domain
CDDcd001671.11E-5151193No hitNo description
Gene3DG3DSA:1.10.10.602.5E-12156206IPR009057Homeodomain-like
PROSITE profilePS5129410.672195244IPR017930Myb domain
SuperFamilySSF466895.62E-19197289IPR009057Homeodomain-like
SMARTSM007178.5E-10199247IPR001005SANT/Myb domain
PfamPF002492.8E-10200240IPR001005SANT/Myb domain
CDDcd001671.13E-5202240No hitNo description
Gene3DG3DSA:1.10.10.601.6E-16207252IPR009057Homeodomain-like
PROSITE profilePS5129417.132246299IPR017930Myb domain
SMARTSM007176.7E-7250297IPR001005SANT/Myb domain
PfamPF002492.0E-11253290IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-14253291IPR009057Homeodomain-like
CDDcd001672.29E-9254292No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MASPPPRRPP SPPPLPPPPS SSPPQSSSQP HSSTGTNLET VDTSIRSSQP PSPPPSAEPL  60
PLPQRIRQIL KCCLTTVCKF IQFCMWLNCE DPLINHGPWT LEEDRSLLTI VQEKGIRNLF  120
DIAVSLATNR IPFQCLARFQ RSLNSSMINS EWTEEEDAQR CSAVAYFGDS NWQNVASVLE  180
RRTGTQFSNR WKKSICPVRK GSFTLKEDER LTVAVMLFGR KWNQIAKYVP GRIQSQCRDR  240
NLNSLDPSLK WGGWTEDEDL RLEAAITKYG YCWSKVAEYV PLRTDSQCRK WKVICPEQVP  300
LLQEARKRQR SLLSSNFVDR ESERPALTLN DFIPLRMVAS SSDVGAKISK GSGRDSRVLT  360
P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-23992897149MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-23992897149MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15091
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004512739.11e-158uncharacterized protein LOC101490682 isoform X1
RefseqXP_004512740.11e-158uncharacterized protein LOC101490682 isoform X2
RefseqXP_012574715.11e-158uncharacterized protein LOC101490682 isoform X3
RefseqXP_027193356.11e-160uncharacterized protein LOC101490682 isoform X4
TrEMBLA0A2Z6NHC41e-158A0A2Z6NHC4_TRISU; Uncharacterized protein
TrEMBLA0A3Q7Y4K51e-158A0A3Q7Y4K5_CICAR; uncharacterized protein LOC101490682 isoform X4
STRINGXP_004512739.11e-157(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74413344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.23e-97myb domain protein 4r1