PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA15073 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | AP2 | ||||||||
Protein Properties | Length: 532aa MW: 59698.6 Da PI: 6.892 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.3 | 6.9e-17 | 175 | 224 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Tp57577_TGAC_v2_mRNA15073 175 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 224 78*******************......55************************997 PP | |||||||
2 | AP2 | 42.8 | 1.3e-13 | 267 | 317 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g Tp57577_TGAC_v2_mRNA15073 267 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKCNG 317 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.81E-16 | 175 | 233 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.3E-9 | 175 | 224 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.9E-32 | 176 | 238 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.596 | 176 | 232 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.31E-11 | 176 | 233 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.0E-17 | 176 | 232 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.04E-25 | 267 | 327 | No hit | No description |
Pfam | PF00847 | 3.5E-9 | 267 | 317 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.32E-17 | 267 | 327 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.4E-32 | 268 | 331 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.475 | 268 | 325 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-16 | 268 | 325 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-6 | 269 | 280 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-6 | 307 | 327 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 532 aa Download sequence Send to blast |
MWDLNGSPFK RKEEESERCS KTSIEGDDEK GKRVGGSISN SSSSAIVIEE DSEEDQQEQE 60 HKNRTMLMKK RNSKIFGFSV TQDEEQEQEE EEEDSLDSEN FPVTRNFFPM DQESDNIMVI 120 ENGTTSSSSA TFPRAHWVGV KFCQSETLGN GKSLEVSSSS QPMKKSRRGP RSRSSQYRGV 180 TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGVEADIN FNIEDYEEDL 240 KQMSNLTKEE FVHVLRRQST GFPRGSSKYR GVTLHKCGRW EARMGQFLGK KYVYLGLFDT 300 EVEAARAYDK AAIKCNGKEA VTNFDPSIYD SELNSAEPAI NVGGDHNLDL SLGNSTSKSM 360 NNAQTYGNHI SNVANHASDQ SNWHNGGNIN KPKLVNILPK PYNRPNNMEA YGRDLHGENE 420 ALRMLSQTHL HSSSSNEMLR YGPFRDHSQM LHSFPHTHPP TNFHFPSSSY GGRVGSDLSL 480 STSNQQQWQS GPHYLATAAA ASSGFPPQIR PSSSSQAWLH KNGFHTLMRP S* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA15073 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013457433.1 | 0.0 | floral homeotic protein APETALA 2 isoform X2 | ||||
Swissprot | P47927 | 1e-123 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A2K3N6I2 | 0.0 | A0A2K3N6I2_TRIPR; Floral homeotic protein apetala 2-like | ||||
STRING | XP_004509117.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3784 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-120 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA15073 |