PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15072
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family AP2
Protein Properties Length: 290aa    MW: 32083.5 Da    PI: 9.5731
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15072genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2445.4e-142575155
                        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                               s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  Tp57577_TGAC_v2_mRNA15072 25 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKCNG 75
                               89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.7E-172585IPR016177DNA-binding domain
CDDcd000188.08E-272585No hitNo description
PfamPF008471.5E-92575IPR001471AP2/ERF domain
SMARTSM003802.4E-322689IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-172683IPR001471AP2/ERF domain
PROSITE profilePS5103215.4752683IPR001471AP2/ERF domain
PRINTSPR003671.9E-62738IPR001471AP2/ERF domain
PRINTSPR003671.9E-66585IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MSNLTKEEFV HVLRRQSTGF PRGSSKYRGV TLHKCGRWEA RMGQFLGKKY VYLGLFDTEV  60
EAARAYDKAA IKCNGKEAVT NFDPSIYDSE LNSAEPAINV GGDHNLDLSL GNSTSKSMNN  120
AQTYGNHISN VANHASDQSN WHNGGNINKP KLVNILPKPY NRPNNMEAYG RDLHGENEAL  180
RMLSQTHLHS SSSNEMLRYG PFRDHSQMLH SFPHTHPPTN FHFPSSSYGG RVGSDLSLST  240
SNQQQWQSGP HYLATAAAAS SGFPPQIRPS SSSQAWLHKN GFHTLMRPS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15072
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457433.11e-173floral homeotic protein APETALA 2 isoform X2
TrEMBLA0A072UNS01e-172A0A072UNS0_MEDTR; AP2 domain transcription factor
TrEMBLA0A072V0391e-174A0A072V039_MEDTR; AP2 domain transcription factor
STRINGXP_004509117.11e-166(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.23e-66AP2 family protein