PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA14931
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family TALE
Protein Properties Length: 338aa    MW: 39044.2 Da    PI: 7.2659
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA14931genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.15.4e-072713002655
                                -HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                   Homeobox  26 saeereeLAkklgLterqVkvWFqNrRake 55 
                                ++++++ LA+++gL+ +q+ +WF N+R ++
  Tp57577_TGAC_v2_mRNA14931 271 NESQKQALAESTGLDLKQINNWFINQRKRH 300
                                6789***********************885 PP
2ELK38.32.8e-13202223122
                        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                ELK qLlrKYsgyLgsLk+EF+
  Tp57577_TGAC_v2_mRNA14931 202 ELKVQLLRKYSGYLGSLKKEFL 223
                                9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.7E-1471115IPR005540KNOX1
PfamPF037905.5E-1873114IPR005540KNOX1
SMARTSM012561.7E-25121172IPR005541KNOX2
PfamPF037913.4E-22124170IPR005541KNOX2
PfamPF037892.1E-9202223IPR005539ELK domain
SMARTSM011887.1E-7202223IPR005539ELK domain
PROSITE profilePS5121311.139202222IPR005539ELK domain
SMARTSM003891.9E-4224307IPR001356Homeobox domain
SuperFamilySSF466893.89E-13224314IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-26227306IPR009057Homeodomain-like
CDDcd000867.18E-9234304No hitNo description
PROSITE profilePS500719.685271303IPR001356Homeobox domain
PfamPF059201.8E-9272299IPR008422Homeobox KN domain
PROSITE patternPS000270278301IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MLGFGGQSCS EISAMDHHHH QHQHHMMNME NNVNRKFFSF PLSNNNSSGV QVHHHNYNQQ  60
QNNNNNTSSS VAVRDKIMAH PLFHRLLSSY LNCLKVGAPP EVVTSLEESC AKCEALNGSS  120
GRSSIGEDPG LDQFMEAYCE MLIKYEQELT KPFKEAMLFL SRIESQLKAL AVSTDFGQSE  180
PASHNEIDMH ENNLDTQGED QELKVQLLRK YSGYLGSLKK EFLKKKKNGK LPKEARQQLL  240
DWWNRHYKWP YPSVTKFYIF HDFIYRSCCF NESQKQALAE STGLDLKQIN NWFINQRKRH  300
WKPSEDMQFA VMDATNYYME NVMCKPFPMD AAMPMLL*
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA14931
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1280610.0EF128061.1 Medicago truncatula class I KNOX homeobox transcription factor (KNOX6) mRNA, complete cds.
GenBankGU4616040.0GU461604.1 Medicago truncatula KNOX6 variant a mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004491125.11e-174homeobox protein SBH1-like isoform X1
SwissprotP466081e-112HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A1S2XLD91e-172A0A1S2XLD9_CICAR; homeobox protein SBH1-like isoform X1
STRINGXP_004491125.11e-173(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20393480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-99KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]