PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA14916
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 439aa    MW: 48177.3 Da    PI: 6.2941
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA14916genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.47.1e-29231289259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                +Dg++WrKYGqK+ kg+++pr+YYrCt+   Cpv+k+v+r+aed+++++ tYeg+Hnh 
  Tp57577_TGAC_v2_mRNA14916 231 SDGCQWRKYGQKMAKGNPCPRAYYRCTMGtACPVRKQVQRCAEDKTILVQTYEGQHNHA 289
                                7***************************98****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-32215291IPR003657WRKY domain
SuperFamilySSF1182901.7E-26223291IPR003657WRKY domain
PROSITE profilePS5081127.956225291IPR003657WRKY domain
SMARTSM007747.2E-33230290IPR003657WRKY domain
PfamPF031061.7E-24232288IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MEEEDIANNV EVPHSSSQVM SFNGKRLIMD EVDFFAQKKM SPVHHDQRME HHHVDTSTST  60
LDLLTKISLC NKSTMDDGEY SEATIRNKNE CAALVAELHQ MNVENQRLKE LVDKLRIDCN  120
TLEEHVLQLK QKQYKQEIND EATEDKKRKN MVELMECDKK TQKICNNGVI QEKMEKDDNE  180
IPQAMKGFPG WLSNNVSRLN SFKGVDDQGT ESMIKKARVS VRARSEATMI SDGCQWRKYG  240
QKMAKGNPCP RAYYRCTMGT ACPVRKQVQR CAEDKTILVQ TYEGQHNHAL PPTAKAMAST  300
TSAAASLLLS GPLTSADGLI NPTILESASI PGSHNMATLS ASAPFPTITL DLTEEATKNS  360
SQQSQFNLIQ PILAQKFMSS LNVSGMENAS FADTVSAATA AMTSDPKFTT ALVAAITSII  420
GNSNSNNNGT ANGTSGDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-22217292175WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA14916
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2357441e-36AC235744.1 Glycine max strain Williams 82 clone GM_WBb0115C15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013459851.10.0probable WRKY transcription factor 31
TrEMBLA0A2K3NQV00.0A0A2K3NQV0_TRIPR; WRKY transcription factor 6-like protein
STRINGXP_004513896.11e-165(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139131222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.19e-73WRKY family protein