PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1491
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family SRS
Protein Properties Length: 331aa    MW: 35925.8 Da    PI: 7.5287
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1491genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702174.74.4e-541352926153
                    DUF702   6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel..kskkqsalss 88 
                                 C+dCGn+akkdC+++RCRtCCk rg+dC+th+kstW+p+++rrer  ++      +   +  +  kr ++l  +s++++a+s+
  Tp57577_TGAC_v2_mRNA1491 135 RVCHDCGNRAKKDCVFRRCRTCCKGRGYDCNTHLKSTWIPSTRRRERDVEMVGGGGGD--GEGCSGVKRAKTLlgSSQNATATSH 217
                               58*********************************************77766654444..4456666666666557788888999 PP

                    DUF702  89 tklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                               ++ s+++++k++ tss          lP +v+++avfrc rv+++ +ge+e+aY ++v+i GhvfkG+Lyd+G +
  Tp57577_TGAC_v2_mRNA1491 218 SSNSNGTTPKSFATSSchqdasfkeaLPGHVNAPAVFRCHRVTAIGNGEDEFAYLATVHICGHVFKGFLYDHGFD 292
                               9999999999999999999******************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR016231.4E-24136178IPR006510Zinc finger, lateral root primordium type 1
PfamPF051421.7E-50136292IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016247.9E-23244290IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSMLGLRDLV LIAPSPSLHH HQHQQQNQNQ PISHDHNSNH SLPSSASLSV GFGIFPLLTA  60
TPCMPQQQPQ NNDVQENHNQ NNNFWNLRMC PEAMNLPKKG VINVDDENQN HNNNSNNKMV  120
LMESEENGVY GSEYRVCHDC GNRAKKDCVF RRCRTCCKGR GYDCNTHLKS TWIPSTRRRE  180
RDVEMVGGGG GDGEGCSGVK RAKTLLGSSQ NATATSHSSN SNGTTPKSFA TSSCHQDASF  240
KEALPGHVNA PAVFRCHRVT AIGNGEDEFA YLATVHICGH VFKGFLYDHG FDGKNPMPCV  300
SELQLGSGKN GECSSALGVT TNNAYPASAS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1491
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU5707631e-125CU570763.5 M.truncatula DNA sequence from clone MTH2-172G19 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003598516.10.0protein LATERAL ROOT PRIMORDIUM 1
TrEMBLG7J0K60.0G7J0K6_MEDTR; LRP1 carboxy-terminal domain protein
STRINGAES687670.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.21e-42Lateral root primordium (LRP) protein-related