PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA14904
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 828aa    MW: 91205.6 Da    PI: 5.7942
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA14904genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32e-06553572626
                                -SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                                Cr++++ G C+ Gd+C+F+H+
  Tp57577_TGAC_v2_mRNA14904 553 CRHYMQ-GRCNEGDKCNFSHD 572
                                ******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.49E-6547572IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99547574IPR000571Zinc finger, CCCH-type
SMARTSM003560.0017548573IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4552572IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.422576603IPR000571Zinc finger, CCCH-type
SMARTSM003560.026576602IPR000571Zinc finger, CCCH-type
SMARTSM003560.52604628IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-5605634IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.296606629IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 828 aa     Download sequence    Send to blast
MNQSGNSKIS SEFPMAFPPY RPSHFRSQTY YTLVRILTHL SPSTVPTQPL NLPDNNGNVG  60
MGQEKEPECS ELKVGSDVKD PKGPVPLEDT IGSVGDKDKD LSATAMVLDD IEFLMGSEEP  120
STQTNDFQCE QKLMDELELV MKGIEDPVCD NGLIPLNCEK QNSGSEVDLM DYQVEEHVEF  180
LQSGTNTSES VSEVLTQVQG EHNELASEGF HVLESTKEHA SNSVISTSRI ENDSQQKETE  240
LVNPASPVAV SLPTIQEDEF EKEEQDGHKV VEETHSSLDL DTNIEALNMA EDGGLLDSSI  300
MKDKFETENE EKSDKLICVR NTTNSSDILI EGDLEEGEIS GYFAMDENTF DVSSVDDIVS  360
EQMKVDEIQK AGNSFGNTIP PLNMGLSFQG FPSNLLTVNA IQDSNSNGQV QPRIINAIPT  420
NLTQNQVLHK GFMEETAIKY HKNSSAAAQQ MADASRKEQS SPGPKKKKTK KEVLDASRKR  480
KHVPDSEKED GMKEDENKQM VDASGRKRGP GSQEKKTRKK EKYRNNRAKK NRELGVKKLK  540
FIPVQKPKIV TFCRHYMQGR CNEGDKCNFS HDTVPSTKSK PCFHFARHSC MKGDDCPYDH  600
QLSKYPCSNF VSKGSCSRGN ACMFSHKVPT NQDMPTPTNA CKPELKSPLS LGNTNFSTPL  660
NNHGNSSVQR NHFTNSKGIY SHTNVEHKVT DTSQTKPTSV PKGIRFINVA NISPSTPKQD  720
TVTPNKGSVG STGTCADKGQ NTVEVPKKFP AATPKGINFL SFGKSSVCSF KSSIQSTTEG  780
KILKLPQSVN VGLSEHSISS LNKDDYGKAS DRTAETELVS HEHMQIR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1465480KKKTKKEVLDASRKRK
2517539RKKEKYRNNRAKKNRELGVKKLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA14904
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003617880.20.0uncharacterized protein LOC11437410 isoform X1
RefseqXP_024640327.10.0uncharacterized protein LOC11437410 isoform X1
RefseqXP_024640328.10.0uncharacterized protein LOC11437410 isoform X1
RefseqXP_024640329.10.0uncharacterized protein LOC11437410 isoform X1
TrEMBLA0A2K3NW460.0A0A2K3NW46_TRIPR; Zinc finger CCCH domain-containing protein
STRINGAET008390.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66502323