PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA14837
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family SBP
Protein Properties Length: 460aa    MW: 50026.4 Da    PI: 7.0559
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA14837genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.37.8e-4296171277
                                -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                        SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                                Cqv gC++dls +k+yh+rhkvC++hsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q
  Tp57577_TGAC_v2_mRNA14837  96 CQVYGCNKDLSGCKDYHKRHKVCDIHSKTSKVIVNGIEQRFCQQCSRFHLLVEFDDGKRSCRKRLAGHNERRRKPQ 171
                                **************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.3E-3290157IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.17193170IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.81E-3994174IPR004333Transcription factor, SBP-box
PfamPF031101.7E-3096169IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MDSWSFVPED NKGRKMGNDV MAAPNAFSGR ELSNSLGDTN GCNSIIDLKL GRFGEHGDAI  60
GTSFSKGTAI LSSSGSSSTP PKRVRSSSVH SQVAYCQVYG CNKDLSGCKD YHKRHKVCDI  120
HSKTSKVIVN GIEQRFCQQC SRFHLLVEFD DGKRSCRKRL AGHNERRRKP QVGIHSGRAG  180
RLLQSYSDSR FQGSMLTSAS FICQELLPSE VLSSEKCGTS NWWRPIKGED ETGTGFRPPS  240
SIPNTNAHPH SQTLFPSYSN KQFPFLHENG AASATGSMFC ENNTQYPPIL GGSSSGSQSL  300
FQDTSLGSED FHVFETESTV QGLSGVSDGG CALSLLSSQS QNSSSQSSVI PMPRPLVIPS  360
SHYSMSGVSD RFPSELNPTD GSHLSPILIS DNDEIVHFEM ADGIFQGSDF GNVKDRLSCE  420
DGTTIDLLQL SSQLQRVEHQ RRALQVKQEN DSSCSLRIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-2887169284squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA14837
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-40AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004488431.10.0teosinte glume architecture 1-like
TrEMBLA0A2K3MQN90.0A0A2K3MQN9_TRIPR; Squamosa promoter-binding-like protein 6-like
STRINGXP_004488431.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.11e-49SBP family protein