PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA14835
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 693aa    MW: 77142.2 Da    PI: 9.7192
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA14835genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.35.3e-113988446
                               S-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHH CS
            Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqk 46
                               W t+E++ll++av+++G ++W+t+a +++       +  t+ +c  ++++
  Tp57577_TGAC_v2_mRNA14835 39 WGTWEELLLACAVNRHGFKDWDTVAMEVQsrtnrptLLATAHHCEQKFYD 88
                               *****************************999999999999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007179.7E-43592IPR001005SANT/Myb domain
PfamPF002493.0E-93989IPR001005SANT/Myb domain
CDDcd001673.22E-53970No hitNo description
SMARTSM002978.5E-14326432IPR001487Bromodomain
Gene3DG3DSA:1.20.920.104.2E-16329444IPR001487Bromodomain
SuperFamilySSF473701.15E-16332429IPR001487Bromodomain
PfamPF004391.3E-9336416IPR001487Bromodomain
CDDcd043691.39E-13336427No hitNo description
PROSITE profilePS5001412.457341413IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MXXXXXXXXX YDMENHQNQT KNPDQDLDKK QHHQHQEGWG TWEELLLACA VNRHGFKDWD  60
TVAMEVQSRT NRPTLLATAH HCEQKFYDLN RRFTDDVPPP QQNGDSADVD SDHVPWLEKL  120
RKERVAELRR DVQRSDVSIL SLQLQVKRLE EEKAKENDGE EDNKPDLAVT GEEQLPENEK  180
TGGEMEEDEP ANSEPDIRRL DDSTTNTDKL LPTTGEESDR DNQSVNESNS TGSRFDAAKT  240
DVKLETGPVH VKSGPNEPVQ TGRKKKSIEE ESNNGSYDNE AKVLTCESVP PSEERKSSSS  300
LSKTRKIRRR KDVSGGDVVP ENEDVAMVKS EPLVGVLEMI KRHEKFSMFE RRLEKNQDLD  360
RYKNIVRQHV DLETIQLRLQ KGHYSSCTSS FFRDLLLLFT NATVFFPRNS SESRAAHQLQ  420
HLVIAEMKSS SQTQSDPITQ KTDSLPPKAA PILVCRKRSA ISTKPSATTL SQKGDHQSVI  480
NVKKERPSFD AKPTLKPSNS ETDEEEPPMA IEKPVTGARS RRSNKNLNSN ADNKKLPSNS  540
TPKTVSSATK PAENPKLDKN KAEGGSDKKK NAAADFLKRI KRNASVEVLR SSGGGGGGSS  600
GSSKGGGGSA NMKEQKKVVN NGKGEKGKER ASRYNDGGES GNKRNKNIDN SRRNVGRPPK  660
KGAETNVVST KRGRESSASG SKDKRPKKRS KK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304311RKIRRRKD
2683691KRPKKRSKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA14835
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004488477.10.0protein mel-28
TrEMBLA0A2Z6PDH80.0A0A2Z6PDH8_TRISU; Uncharacterized protein
STRINGXP_004488477.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.13e-75DNA-binding bromodomain-containing protein