PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA14564 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 141aa MW: 15615.5 Da PI: 6.4955 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 140.9 | 4.2e-44 | 9 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +CaaCk+lrrkC++dC++apyfp e+p+kfanvhk+FGasnv+kll+++ +++red+++sl+yeAear++dPvyG+vg+i+ lq Tp57577_TGAC_v2_mRNA14564 9 PCAACKFLRRKCNQDCIFAPYFPPEEPHKFANVHKVFGASNVSKLLNEVLPHQREDTVNSLAYEAEARIKDPVYGCVGFISGLQ 92 7*********************************************************************************** PP DUF260 85 qqleqlkaelallke 99 +ql l++el+++++ Tp57577_TGAC_v2_mRNA14564 93 RQLLGLQKELDATNA 107 **********99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.494 | 8 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-43 | 9 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MTSSYSNSPC AACKFLRRKC NQDCIFAPYF PPEEPHKFAN VHKVFGASNV SKLLNEVLPH 60 QREDTVNSLA YEAEARIKDP VYGCVGFISG LQRQLLGLQK ELDATNADLI QFTIQGSSSL 120 GLGHVDYSNG FYNYPSNFEQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-58 | 2 | 113 | 4 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-58 | 2 | 113 | 4 | 115 | LOB family transfactor Ramosa2.1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA14564 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC174342 | 1e-134 | AC174342.16 Medicago truncatula chromosome 6 clone mth2-166e17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003618147.1 | 2e-85 | LOB domain-containing protein 25 | ||||
Refseq | XP_024641260.1 | 2e-85 | LOB domain-containing protein 25 | ||||
Refseq | XP_024641261.1 | 2e-85 | LOB domain-containing protein 25 | ||||
Refseq | XP_024641262.1 | 2e-85 | LOB domain-containing protein 25 | ||||
Swissprot | Q8L8Q3 | 2e-63 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
Swissprot | Q9FML4 | 3e-63 | LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES | ||||
TrEMBL | A0A2K3KYH0 | 1e-100 | A0A2K3KYH0_TRIPR; LOB domain-containing protein 25-like | ||||
STRING | AES74365 | 7e-85 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1091 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 8e-66 | LOB domain-containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA14564 |
Publications ? help Back to Top | |||
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