PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA14386 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 89aa MW: 10644.2 Da PI: 10.4513 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.5 | 0.00014 | 49 | 72 | 8 | 30 |
HHHHHHHHHHHHHHHHHCTSCC.C CS HLH 8 rErrRRdriNsafeeLrellPk.a 30 +ErrRR++ s++ Lr+l+P+ Tp57577_TGAC_v2_mRNA14386 49 AERRRREKHISRLYILRSLIPNiT 72 7********************844 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 89 aa Download sequence Send to blast |
MEQENYNRLN VSLDELGFNS ENVSKTWKKR KEYYNEDGIR VFTAKNLGAE RRRREKHISR 60 LYILRSLIPN ITKASFLNFP HFLKYSFI* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 49 | 54 | ERRRRE |
2 | 50 | 55 | RRRREK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA14386 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024636481.1 | 2e-18 | transcription factor DYT1 | ||||
TrEMBL | A0A072UQ30 | 4e-17 | A0A072UQ30_MEDTR; Helix loop helix DNA-binding domain protein | ||||
TrEMBL | A0A396ICM9 | 1e-17 | A0A396ICM9_MEDTR; Putative transcription factor bHLH family | ||||
STRING | XP_004504967.1 | 3e-14 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5510 | 29 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G16910.1 | 5e-08 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA14386 |