PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA14305
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family DBB
Protein Properties Length: 97aa    MW: 10640.9 Da    PI: 7.809
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA14305genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.72.1e-07444539
                   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                                C+ +++++   +C+++   lC +C  + H+       H++
  Tp57577_TGAC_v2_mRNA14305  4 LCDFCGDQRSVVYCRSDAASLCLSCDRNVHSAntlskrHSR 44
                               7*****************************65666666765 PP
2zf-B_box25.23.4e-084690442
                   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42
                                +C++++ +++   C + ++ lC++C  + H g       H+++++
  Tp57577_TGAC_v2_mRNA14305 46 LVCERCNLQPAYVRCVEEKVSLCQNCDWSAH-GtdpssstHKRQSI 90
                               68*****************************.55889999998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.613147IPR000315B-box-type zinc finger
SMARTSM003361.1E-9147IPR000315B-box-type zinc finger
PfamPF006432.5E-5444IPR000315B-box-type zinc finger
CDDcd000217.41E-5435No hitNo description
PROSITE profilePS501199.1584390IPR000315B-box-type zinc finger
PfamPF006436.3E-64690IPR000315B-box-type zinc finger
SMARTSM003360.114890IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MGSLCDFCGD QRSVVYCRSD AASLCLSCDR NVHSANTLSK RHSRTLVCER CNLQPAYVRC  60
VEEKVSLCQN CDWSAHGTDP SSSTHKRQSI NCYSGC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA14305
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9621371e-129CR962137.2 Medicago truncatula chromosome 5 clone mte1-10p15, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003615555.17e-62zinc finger protein CONSTANS-LIKE 9
RefseqXP_024640281.17e-62zinc finger protein CONSTANS-LIKE 9
SwissprotQ9LUA91e-48COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A2K3NYD64e-63A0A2K3NYD6_TRIPR; Zinc finger protein CONSTANS-like 9-like
STRINGAES985133e-61(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43623353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.16e-51B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]