PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA14231 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | Whirly | ||||||||
Protein Properties | Length: 264aa MW: 29641 Da PI: 9.3581 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 172.2 | 1.2e-53 | 83 | 222 | 1 | 138 |
Whirly 1 svyktkaalkvkavrptfealds..gnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaa 82 s+yk+ka l+v ++ p+f++l+s g++k++++G ++le+a+a++ +ydW++kq+f+ls+ e+++l++l ++esceffhd + Tp57577_TGAC_v2_mRNA14231 83 SIYKAKAVLTVSPRPPQFTTLNSgsGAFKISKEGCVMLEFAPAAGAYQYDWNRKQVFSLSVDEIGNLISLRPRESCEFFHDLFI 166 79*****************998622689******************************************************** PP Whirly 83 kgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138 ++s+eGkvrk lkv+Pl d sG+++n+sv+n+l + ne++ +Pv+kaefav++sl+ Tp57577_TGAC_v2_mRNA14231 167 GKSDEGKVRKFLKVKPLLDRSGHMFNISVENKLENINENILIPVTKAEFAVFNSLF 222 ****************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 1.1E-66 | 72 | 245 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 1.33E-63 | 77 | 256 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 1.3E-53 | 84 | 220 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MKILQAQSYT TTTNPFSIPT HSFITPKLSI PVRHVGPTFS STLQQFSITC RRPYPFQPKQ 60 SPPPPSPSSS VGELPAKIYV GHSIYKAKAV LTVSPRPPQF TTLNSGSGAF KISKEGCVML 120 EFAPAAGAYQ YDWNRKQVFS LSVDEIGNLI SLRPRESCEF FHDLFIGKSD EGKVRKFLKV 180 KPLLDRSGHM FNISVENKLE NINENILIPV TKAEFAVFNS LFDFIMPSLL GWNVFTNTIN 240 PEVNNTNQGI EEDFEWNKFN RIM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4koo_A | 2e-78 | 74 | 240 | 5 | 169 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_B | 2e-78 | 74 | 240 | 5 | 169 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_C | 2e-78 | 74 | 240 | 5 | 169 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_D | 2e-78 | 74 | 240 | 5 | 169 | Single-stranded DNA-binding protein WHY1, chloroplastic |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In nucleus, modulates telomere length homeostasis by inhibiting the action of the telomerase at the extreme termini of chromosomes. Is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Is required for full salicylic acid-dependent plant disease resistance responses. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:17217467, ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA14231 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) and infection by H.parasitica. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:19669906}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY183085 | 8e-68 | AY183085.1 Trifolium repens clone ca297 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004490008.1 | 1e-115 | single-stranded DNA-binding protein WHY1, chloroplastic-like isoform X1 | ||||
Swissprot | Q9M9S3 | 3e-86 | WHY1_ARATH; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A0A2Z6P855 | 1e-125 | A0A2Z6P855_TRISU; Uncharacterized protein | ||||
STRING | XP_004490009.1 | 1e-114 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6416 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14410.1 | 9e-80 | ssDNA-binding transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA14231 |