PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA14195
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 253aa    MW: 27925.8 Da    PI: 10.1448
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA14195genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.9e-10106147344
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                                rW++ E++l++ +  ++G+g+W++Ia+++   +t+ q++++ 
  Tp57577_TGAC_v2_mRNA14195 106 RWSQLEHDLFLMGLIEYGKGRWSKIAKHFVCSKTPQQVQNYA 147
                                9*****************************889*****9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.906102155IPR017884SANT domain
SMARTSM007175.6E-8103153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-9106146IPR009057Homeodomain-like
PfamPF002499.4E-9106146IPR001005SANT/Myb domain
CDDcd001673.23E-9106147No hitNo description
SuperFamilySSF466891.2E-9107154IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MSIEIIDLTN TPDTPPSKPI SSSNASMILN FGPVSVNPNL HQHIHHHQHQ TTLLVPVAPT  60
HTNETPQIAT GWPQPGVFHS RVTTVLKPLP EPNTSQLSSE IRLGVRWSQL EHDLFLMGLI  120
EYGKGRWSKI AKHFVCSKTP QQVQNYAASF FKHLPPAYVH GFKRRKQIAN PNNSFSKRNR  180
NSSNYSIPNM IPTKQALTLL PATAPYHQVG KYYGGEASTS MMNDGASTSM TIMPNATSTN  240
GKVDLELRLA LC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA14195
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027192183.13e-87uncharacterized protein LOC101488688
TrEMBLA0A2K3LNC46e-98A0A2K3LNC4_TRIPR; MYB-like protein H-like (Fragment)
STRINGXP_004509512.11e-82(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14942612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-14MYB family protein