PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA14114 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 221aa MW: 24863.3 Da PI: 8.4893 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 32.4 | 3.1e-10 | 112 | 177 | 22 | 91 |
FAR1 22 skrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 + ++ t+ Cs+ k +++k+ ++++ t+t+Cka+l+ ++ +g+ ++++ leHnHel+p Tp57577_TGAC_v2_mRNA14114 112 N-GDDGKRYFTLGCSRARKYVSNSKN---LLKPNPITKTQCKARLNACMSLEGTITISSVILEHNHELSP 177 3.33336677899***9999999888...899************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.7E-7 | 114 | 177 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
LEKKPPHLLS RVNVSPFAEH PICSNHICCC HYHFCSCRLV AATHNPNFLF CSIHLQQLNI 60 QLITMAERVA SSFDEETSEG SKKNDDILDK KLPYDGENPR AGMTFSSEDE KNGDDGKRYF 120 TLGCSRARKY VSNSKNLLKP NPITKTQCKA RLNACMSLEG TITISSVILE HNHELSPTKA 180 RYFRCNKNLG PYMKRRLELN DQAGINVSRN FRSLVVEADG * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA14114 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024626806.1 | 2e-57 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A392M6P6 | 3e-90 | A0A392M6P6_9FABA; Protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
STRING | XP_004496070.1 | 5e-50 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF27077 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 8e-06 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA14114 |