PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA14103

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 440aa MW: 48768.9 Da PI: 6.6076

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA14103	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.6	1.9e-12	375	420	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ +k + +++L +AveYIk+Lq Tp57577_TGAC_v2_mRNA14103 375 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTSDMLDLAVEYIKDLQ 420 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.837	369	419	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.76E-16	372	430	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.84E-12	373	424	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.6E-15	374	430	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-9	375	420	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-13	375	425	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MESDLQQHPT MFLDHQNHHQ QQMNSGLTRF KSAPSSYFSN IIDKEFYEHL FNRPSSPETE 60 RVFARFMNXX XXXXXXXXXX XXXXXGGDAE SVSVSATASV AVVDDSLTQN LSSVQQQLPI 120 VKEEIDQQSQ TMSSMNNNNN NNNNNNETMD LQQLQRTQSN MNSYGSNVPQ NFYQSSGRPP 180 LPNQMKTGRA NLIRHGSSPA GLFSNINIET GFNAMRGIGS MGAANSTSKE AKFSSAVRLK 240 NASNYTSVLG AEIGNSSIPQ NNPEPEGFAE TRGNDFIPGF PLGTTWEDTA MIADNITGLK 300 RFRDDDDVKP FSAGLNPAET KNETGGQPPT TPLAHQMSLP NTTAELAAIE KFLQFSDSVP 360 CKIRAKRGCA THPRSIAERV RRTKISERMR KLQDLVPNMD KQTNTSDMLD LAVEYIKDLQ 420 NQVETLSDNR AKCTCSHKR*

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MESDLQQHPT MFLDHQNHHQ QQMNSGLTRF KSAPSSYFSN IIDKEFYEHL FNRPSSPETE  60
RVFARFMNXX XXXXXXXXXX XXXXXGGDAE SVSVSATASV AVVDDSLTQN LSSVQQQLPI  120
VKEEIDQQSQ TMSSMNNNNN NNNNNNETMD LQQLQRTQSN MNSYGSNVPQ NFYQSSGRPP  180
LPNQMKTGRA NLIRHGSSPA GLFSNINIET GFNAMRGIGS MGAANSTSKE AKFSSAVRLK  240
NASNYTSVLG AEIGNSSIPQ NNPEPEGFAE TRGNDFIPGF PLGTTWEDTA MIADNITGLK  300
RFRDDDDVKP FSAGLNPAET KNETGGQPPT TPLAHQMSLP NTTAELAAIE KFLQFSDSVP  360
CKIRAKRGCA THPRSIAERV RRTKISERMR KLQDLVPNMD KQTNTSDMLD LAVEYIKDLQ  420
NQVETLSDNR AKCTCSHKR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA14103

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013456221.1	0.0	transcription factor bHLH122
TrEMBL	A0A2Z6PUD9	0.0	A0A2Z6PUD9_TRISU; Uncharacterized protein
STRING	AES62716	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4185	34	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	3e-62	bHLH family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA14103