PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA141

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

HSF

Protein Properties

Length: 290aa MW: 32330.1 Da PI: 7.9517

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA141	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	118.7	3.3e-37	10	101	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 Fl+k+y++++d +++++iswseng+sfvv+++ +fa+++LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF++++Fk Tp57577_TGAC_v2_mRNA141 10 FLTKTYNMVDDFATDDVISWSENGESFVVWKHADFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDK---------WEFANENFK 86 9**************************************************************999.........***** PP XXXXXXXXXXXXXXX CS HSF_DNA-bind 88 kgkkellekikrkks 102 +g+k+ll +ikr+k+ Tp57577_TGAC_v2_mRNA141 87 QGQKHLLIDIKRRKT 101 ***********86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.0E-38	3	94	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.1E-60	6	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.9E-33	7	99	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	5.5E-21	10	33	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	6.6E-32	10	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.5E-21	48	60	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	49	73	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.5E-21	61	73	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009408	Biological Process	response to heat
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MSQRSVPAPF LTKTYNMVDD FATDDVISWS ENGESFVVWK HADFARDLLP KYFKHNNFSS 60 FVRQLNTYGF RKVVPDKWEF ANENFKQGQK HLLIDIKRRK TIPQPSSQPL ETEKTNADNS 120 SPSNSANDGA GSTSSSTSSP DSKNPGSIET TLPHSVNLSS ENEKLKKDNE ILSNELARAK 180 KQCDELVTFL KNGLNVGPDQ IDRIMKPQGN YESVQNAVGE GEENGRDCLK LFGVWLKGED 240 YSKKRKNNMR DCEDQLGFGG AKAKVMNNNV VDFSAVNVVN MMKSGKVCN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-25	6	101	26	131	Heat shock factor protein 1
5d5v_B	1e-25	6	101	26	131	Heat shock factor protein 1
5d5v_D	1e-25	6	101	26	131	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA141

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003611751.2	1e-161	heat shock factor protein HSF24
Swissprot	P22335	6e-87	HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBL	A0A2Z6LN09	0.0	A0A2Z6LN09_TRISU; Uncharacterized protein
STRING	AES94709	1e-156	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7114	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36990.1	9e-75	heat shock factor 4

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA141

Publications ? help Back to Top
Scharf KD, et al. Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF. EMBO J., 1990. 9(13): p. 4495-501 [PMID:2148291]