PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA13866
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 533aa    MW: 60505.7 Da    PI: 7.2043
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA13866genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.1e-11342386554
                                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                h + ErrRR+++N+ f+ Lr llP+      +K +Ka+iL  A e ++sL
  Tp57577_TGAC_v2_mRNA13866 342 HMISERRRREKLNENFQALRALLPQG-----TKKDKASILITAKETLRSL 386
                                8899********************97.....7***********9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.24E-10335390No hitNo description
PROSITE profilePS5088813.999337386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.23E-14338405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-14341403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-8342386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-9343392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MYHMEGVFSL PIAVRTEFIH TLMQSLGGCC YICLWAYNTI LPNRLSFLDG FYNVLNNQIP  60
SSSLGSVAQQ LFNQYRILSF DVNDDCVPGL AFRNQQPYLE LQQLELLALS TTEIQTQFYQ  120
EARIKTAVFM GCNKGEIELG FLNMSQVDIQ TALSSLFPED FSRETQQIID QNTNPPSSSS  180
SSMRSLSAAG SPEYSSLIFN NIPTGRTSPS QFPPDHTHLG GSIIPPMRPI SNTLPLQLQQ  240
FPQITPTQLF STTQMNHQND AIMRAIQNVI STPPSQQNLH GVHQEASAFG RYRNDKSPNI  300
GSNFRRQSLM KRSFSFFRNL NLMRLRDRST QAMRPSSNQL HHMISERRRR EKLNENFQAL  360
RALLPQGTKK DKASILITAK ETLRSLMAEI DKLSKRNHEL MSQQLPAANK ESTKTKEIIK  420
LSSNERLNVQ ILHVPESSSL EDEPMIVDLQ VNVMGQISQV DMLIRLLEFL NRVQHVNLLS  480
MDATNTNNAQ GDNSIHQITF RLRITQECEW DEEAFQEAVR RVVADLMHSQ VD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1345350ERRRRE
2346351RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA13866
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1385261e-165AC138526.28 Medicago truncatula clone mth2-17n24, complete sequence.
GenBankAC1487751e-165AC148775.2 Medicago truncatula chromosome 2 clone mth2-62i21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024631492.10.0putative transcription factor bHLH041 isoform X1
TrEMBLG7IIK80.0G7IIK8_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGAES654510.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-69bHLH family protein