PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA13742
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 790aa    MW: 90643.2 Da    PI: 7.4248
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA13742genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR140.77.7e-1353135289
                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                                +Y +YAk++GF v k +sk+ ++ +  +  t+ C+++ +  +++k+    +++  +++t+C+a+l+  +  dg+  v++++leH
  Tp57577_TGAC_v2_mRNA13742  53 YYMNYAKNIGFGVGKISSKNGDDGK--KYFTLACNCSRRYVSTSKN---PSKQYLTSKTQCRARLNACMALDGTITVSRVVLEH 131
                                9*************99988875444..6677777777777666666...6789999**************************** PP

                       FAR1  86 nHel 89 
                                nHel
  Tp57577_TGAC_v2_mRNA13742 132 NHEL 135
                                **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-1052135IPR004330FAR1 DNA binding domain
PfamPF105517.8E-32254348IPR018289MULE transposase domain
PROSITE profilePS5096610.41539575IPR007527Zinc finger, SWIM-type
PfamPF044342.1E-6541571IPR007527Zinc finger, SWIM-type
SMARTSM005754.2E-4550577IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MEEIVASSDK EKTNEGNRNC NSNNDNLAAT VACEDEEPRT GMTFSSEEEV TRYYMNYAKN  60
IGFGVGKISS KNGDDGKKYF TLACNCSRRY VSTSKNPSKQ YLTSKTQCRA RLNACMALDG  120
TITVSRVVLE HNHELGFAKG RYFRLDESLG PPRLELNDQV ANSVGKNLQS AAVETNGFEN  180
LTLGEKDCRN HVPKVRRLRL GRGDVDAIHS FFHRMQKQNS QFYCAMDMDD KGIIQNLFWA  240
DARSRAAYEY FGEVITFDTT YSIDKYDLPL TPFVGVNHHG QSILLGCAIL SNMDTKTLTW  300
LFTRLLECMH GHAPNGIITN EDSAMKSAIQ DVFPKARHLW CLWHIMKKVP EILGKHSCYE  360
SIKTLLDGVV YDSLSKSDFI ERWGNMVEHY KLHDNEWLKG LFDERHRWVP VYVKETFWAG  420
MSTTQRSESI DSYFDGYVNS KTTLKLFVEQ YDTALNDKIE KESMADFDSF NTTIACVSHF  480
GFEIQFQKAF TNAKFIEFQV EVSSMMYCNT SFERLEDSNS IFSVTENKKV NEKIKDVVFK  540
VSFNEKDFKL RCTCCLFEFK GILCRHILCV LKLVGKTDSV PPYYIFPRWM KYVKRRYTLI  600
KRGFEELQRV NIACDAFYEV ASTMINSEDD LLKVLNLIKD LKNVLTCKEP SSRSAYELSS  660
VPNHVTRMLD PTVTQSNGCP PLKRKTSNID QILKKKLARN KQKNNQENKN DQRQEEGLLC  720
TPIVQEIDNE EHLGDASQVL YCPQIRNQNV SCSELLQVLV ISFVIIWSNF NILSVIFLPV  780
YSFCRHNTT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA13742
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024639920.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A2K3NPA80.0A0A2K3NPA8_TRIPR; Protein FAR1-related sequence 6-like
STRINGXP_004496070.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-116FAR1 family protein