PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA13672
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family G2-like
Protein Properties Length: 413aa    MW: 46569 Da    PI: 6.6974
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA13672genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like986.8e-31237291155
                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                k+r+rWt++LHe+Fve+v++LGG+ekAtPk+il++m+ + Lt+ hvkSHLQkYR+
  Tp57577_TGAC_v2_mRNA13672 237 KTRIRWTKDLHEKFVECVNRLGGAEKATPKAILKMMDSDVLTIFHVKSHLQKYRT 291
                                68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.06E-16235291IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-27235292IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-22237292IPR006447Myb domain, plants
PfamPF002492.4E-7241290IPR001005SANT/Myb domain
PfamPF143795.4E-19321368IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
LLNFKFGNSS SEYLNMREVW NIGRCNQQIS IVEEGEGEST KSSNTNTIMS RFESPASAFY  60
ATENCMGFAE FDNQVDNSNN NPCLSSQLYK LNDLEFPLYQ SLRENNHFLE SSNQLDPNLE  120
FSNTLQALVK SQLNGNQCLR SPENSNKFSC EDFPGIKSFP IEQQKLFFDG LASASNSSSF  180
CNKGNHDYMV ARGPYHLSVE QLNFASHHEK LCPTISAGSS STSLGNTTSN GNVVSSKTRI  240
RWTKDLHEKF VECVNRLGGA EKATPKAILK MMDSDVLTIF HVKSHLQKYR TAKFMPESVQ  300
GKSDKRIHTE DLHHVGVKTG FQIKEALQLQ LDAQRRLHEQ LEIQRMLQLR LEEQGRQLKE  360
MFDKQQKTSN NLFNTPNTVN DDSTKIRHKD AEVSISEGAE NSLIPCKISL DT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-22237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-22237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-22237294158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-22237294158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-22237294158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-22237294158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-22237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-22237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-22237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-22237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-22237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-22237294259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA13672
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625245.10.0myb family transcription factor PHL5
SwissprotQ0WVU32e-65PHL5_ARATH; Myb family transcription factor PHL5
TrEMBLA0A2Z6LUX60.0A0A2Z6LUX6_TRISU; Uncharacterized protein
STRINGAES814630.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37403465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.28e-42G2-like family protein