PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA13587 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | WRKY | ||||||||
Protein Properties | Length: 516aa MW: 57740.9 Da PI: 6.0177 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 83.2 | 2.5e-26 | 351 | 409 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYG+K++kgs+++rsYY+C+s+ +Cp++k+ve+s++++++ ++tY+g+H+h+ Tp57577_TGAC_v2_mRNA13587 351 EDSWQWRKYGRKPIKGSPHSRSYYKCSSSnNCPARKHVEKSETEENTYVVTYRGKHDHR 409 7**************************999****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.9E-27 | 342 | 411 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.42E-23 | 344 | 411 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.885 | 345 | 411 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.4E-30 | 350 | 410 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-22 | 351 | 408 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 516 aa Download sequence Send to blast |
MIFAIMHAID RLFTIKSKLH FEFHIMDNDD WDLSSIVRSC KATTFSDPST ISETPPQNLT 60 TTVTPTTNFI VSTINTTTSC FGEFIFNQEI SSVENTYTAD NDWDLSSIVR SCKATTFTNS 120 SIFCETPAQN LTTSVTTTTA NSRASPINTT PCFADFTFNQ ENSFVSFTPL KPNDFLDLNK 180 LRVDFNSITN IPTPTTTSIP ITVTTTTSSL TTTGLSTHIA PNIITNTNTD VQVSNQNSTL 240 FDFSTPIKQH PMQPNEFTEK YNFITKFNPT TAIPTPETTM PTSAISTPIT TNHTTIIPIT 300 TTTTFTNPTT TISTHTTTPT HPQQPKPQSR ISKNKNLVTS ICHVNEDKLS EDSWQWRKYG 360 RKPIKGSPHS RSYYKCSSSN NCPARKHVEK SETEENTYVV TYRGKHDHRK PEVKQNSDNE 420 TSRNKPLEAR LPVVGQAGXX KTWVFLMWPW MMLQRDEPER SNAPISSGEL EIPYSETNFI 480 GSSNDDDDIL IPNMSIMSED FLLDFNHLNG SSVLP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-16 | 352 | 411 | 16 | 74 | WRKY transcription factor 1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA13587 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3L8Q1 | 1e-99 | A0A2K3L8Q1_TRIPR; WRKY transcription factor |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17879 | 2 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52830.1 | 1e-26 | WRKY DNA-binding protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA13587 |