PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA13497

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

WRKY

Protein Properties

Length: 545aa MW: 60881.7 Da PI: 5.4588

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA13497	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	72.8	4.5e-23	325	384	2	59
--SS-EEEEEEE--TT-S.S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgse.fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYG+K++kgs ++rsYY+C++ +Cp++k +e+s++++++ +itY+g+H+h+ Tp57577_TGAC_v2_mRNA13497 325 EDRWQWRKYGRKPIKGSSlHSRSYYKCSTFkDCPARKLIEKSKTEEDTYVITYRGKHDHR 384 7*************86489**8766**************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.4E-23	314	386	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-19	317	386	IPR003657	WRKY domain
PROSITE profile	PS50811	23.548	319	386	IPR003657	WRKY domain
SMART	SM00774	5.9E-24	324	385	IPR003657	WRKY domain
Pfam	PF03106	2.1E-19	325	383	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence Send to blast
MDSDDNWDLS SIVRSCKATT FSNSSTICET LPQNLTTTIT PTTKCIVSPI NTTPFCFGDF 60 IFNQEISSVE NTYTMDNDWD LSSIVRSCKP STFTNTSTFC ETPTQNLTTT VATTTTNSRV 120 SPINTTSSYF ANFTFNQENC SAFLTPLKPN DFLDLNSNSN PISHIPTPTT TNIPITVATT 180 TSSVTTTTTF STHITPNITT NINPSGLISI QNPTFFNFST PTKQYPVQPN MFTEKDSLNF 240 TPNFNLTTSI LTPKTTMNTF AITTPTTTNR TTIIPTTTFT TPITTISTQT ITPTQLQQQK 300 LQTEKGKNKN LVTSVCHVKE HQLSEDRWQW RKYGRKPIKG SSLHSRSYYK CSTFKDCPAR 360 KLIEKSKTEE DTYVITYRGK HDHRIPEVKR NSNIGTSRNK SSETRLSVVE PVGSSQNFKN 420 LSSPNVGMVQ FDQSESNNGQ VLDGHLKITN LETELNESQS HVVGEVGSSQ DVQRLDSHNK 480 MMLECDELER NKAQIFQGEL EIPYSEIEFT GSYNDDDDIL IPNMSAMLED FLLEYNHLDG 540 SVLP*

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence Send to blast

MDSDDNWDLS SIVRSCKATT FSNSSTICET LPQNLTTTIT PTTKCIVSPI NTTPFCFGDF  60
IFNQEISSVE NTYTMDNDWD LSSIVRSCKP STFTNTSTFC ETPTQNLTTT VATTTTNSRV  120
SPINTTSSYF ANFTFNQENC SAFLTPLKPN DFLDLNSNSN PISHIPTPTT TNIPITVATT  180
TSSVTTTTTF STHITPNITT NINPSGLISI QNPTFFNFST PTKQYPVQPN MFTEKDSLNF  240
TPNFNLTTSI LTPKTTMNTF AITTPTTTNR TTIIPTTTFT TPITTISTQT ITPTQLQQQK  300
LQTEKGKNKN LVTSVCHVKE HQLSEDRWQW RKYGRKPIKG SSLHSRSYYK CSTFKDCPAR  360
KLIEKSKTEE DTYVITYRGK HDHRIPEVKR NSNIGTSRNK SSETRLSVVE PVGSSQNFKN  420
LSSPNVGMVQ FDQSESNNGQ VLDGHLKITN LETELNESQS HVVGEVGSSQ DVQRLDSHNK  480
MMLECDELER NKAQIFQGEL EIPYSEIEFT GSYNDDDDIL IPNMSAMLED FLLEYNHLDG  540
SVLP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA13497

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17879	2	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	5e-23	WRKY DNA-binding protein 27

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA13497