PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA13487 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | WRKY | ||||||||
Protein Properties | Length: 582aa MW: 62975 Da PI: 7.9349 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.7 | 1.6e-30 | 309 | 367 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+ Tp57577_TGAC_v2_mRNA13487 309 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDKTILVTTYEGTHNHP 367 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.6E-33 | 293 | 369 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.63E-28 | 301 | 369 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.677 | 303 | 369 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-36 | 308 | 368 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-26 | 310 | 367 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 582 aa Download sequence Send to blast |
MDKGWGLALD TSSSSSPIPI SSLNSFSRHN TNDNNNNRMF PILGFPVNLT RNTEDSGDRK 60 ITSEVDFFSD RNKPSSSASH EQHQHVKSNI VKKEIISTDE KHVNTGLQLA NTGSDQSVVD 120 DGVSSDAENK RAKTTELAQL QVELQRMNSE NKKLKEMLNH VTGNYTALQM QLVALMQKNH 180 HTENEAVNAK AEEKNQGVGG GMVPRQFLAI TNGTTEVDDQ VSNSSSDERT RSNTPMNNQI 240 EGGTRDHIRN NNGKNGRDDS PESETQGWGP NKAQKILNSS NVNDQANTEA TMRKARVSVR 300 ARSEASMISD GCQWRKYGQK MAKGNPCPRA YYRCTMAVGC PVRKQVQRCA EDKTILVTTY 360 EGTHNHPLPP AAMAMASTTS AAASMLLSGS MSSADGIMTP NLLARAILPC STSMATLSAS 420 APFPTVTLDL TQNSNPNPNP LQFQRPHHAP FQVPNFFQGQ QQPQNFAQAA ASLYNQSKFS 480 GLQLSQEIGS SHLTTQASTQ QQQQQPSLAD SVSXXXXXXX XXXXXXXXXX XAATAAITSD 540 PNFTAVLAAA ISSIIGGGHA NNNNANTNNN SRSSISNFSG N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-22 | 295 | 371 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA13487 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU526034 | 0.0 | EU526034.1 Medicago truncatula WRKY transcription factor WRKY100630 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013462871.1 | 0.0 | WRKY transcription factor 6 | ||||
Swissprot | Q9C519 | 1e-148 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | B3U397 | 0.0 | B3U397_MEDTR; Putative transcription factor WRKY family | ||||
STRING | XP_004486177.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF866 | 34 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-114 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA13487 |