PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA13486 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | GATA | ||||||||
Protein Properties | Length: 151aa MW: 17047.8 Da PI: 9.4528 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 28.1 | 2.8e-09 | 61 | 80 | 1 | 20 |
GATA 1 CsnCgttkTplWRrgpdgnk 20 Cs C+t++TplWR+gp g+k Tp57577_TGAC_v2_mRNA13486 61 CSECKTKSTPLWRKGPKGPK 80 ******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 10.673 | 55 | 86 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 9.1E-4 | 55 | 97 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.7E-5 | 55 | 79 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.2E-8 | 59 | 81 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 8.3E-7 | 61 | 80 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MREEKRARAE KRAKAKAKAK AIAEKKIKKS SSTVKKTFGC CMMRAENDYT LLENHAKGMV 60 CSECKTKSTP LWRKGPKGPK VVWAIGGATR YDWGDVSLFL WDVKGVKEET HGGCECDALF 120 DKWYDLENTE QLIIILYTLI ATHHIYICSN * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA13486 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56860.1 | 4e-06 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA13486 |