PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA13476 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | WRKY | ||||||||
Protein Properties | Length: 190aa MW: 22122.6 Da PI: 4.882 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 74.5 | 1.3e-23 | 15 | 75 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK++ ++++ rsYYrC+++ +C + k+v+r + dp + +tY g+Hn++ Tp57577_TGAC_v2_mRNA13476 15 EDGYEWRKYGQKKIMNAKYIRSYYRCSYKneqDCAAMKQVQRIQVDPPLYRTTYYGHHNCK 75 8***************************98889**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 20.725 | 9 | 77 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.3E-24 | 9 | 76 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.32E-23 | 11 | 76 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.1E-33 | 14 | 76 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-23 | 15 | 75 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
SNAITWEKDS SILIEDGYEW RKYGQKKIMN AKYIRSYYRC SYKNEQDCAA MKQVQRIQVD 60 PPLYRTTYYG HHNCKTSNLD ITSLEPNNTS SMFINFNDSF QTKEQYPSFS SSSFSKSTKQ 120 EPIEVINIPY DHIAENQLIS LDYPLSCDYE LEFDYLRHAT MLSSTQSVEF HDVYEPCSLD 180 FDSKSCFGL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 5e-18 | 14 | 75 | 8 | 69 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA13476 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC147713 | 5e-56 | AC147713.21 Medicago truncatula clone mth2-138b11, complete sequence. | |||
GenBank | AC191600 | 5e-56 | AC191600.2 Medicago truncatula chromosome 2 BAC clone mth4-39h3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024632081.1 | 5e-85 | probable WRKY transcription factor 70 | ||||
TrEMBL | G7IR23 | 5e-85 | G7IR23_MEDTR; WRKY family transcription factor | ||||
STRING | AES66544 | 9e-86 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12638 | 11 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22570.1 | 6e-24 | WRKY DNA-binding protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA13476 |