PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA13414
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family BES1
Protein Properties Length: 320aa    MW: 34389.2 Da    PI: 8.0078
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA13414genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822213.84.3e-6621441150
                     DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaags 84 
                                ++++r+ptwkErEnnkrRERrRRaiaaki++GLR++Gnyklpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp e+++++g 
  Tp57577_TGAC_v2_mRNA13414   2 TSGTRQPTWKERENNKRRERRRRAIAAKIFSGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPVERMDVVGG 85 
                                5899******************************************************************************** PP

                     DUF822  85 sasaspesslqsslkssalaspvesysaspksssfpspssldsis.lasaasllpvlsvlslvsssl 150
                                sa  sp+ss++        +sp++sy++sp sssfpsp s+  ++ + +a+sl+p+l++ls+ sss+
  Tp57577_TGAC_v2_mRNA13414  86 SAMGSPCSSYH--------PSPCASYNPSPGSSSFPSPRSSHAVTpNGDANSLIPWLKNLSSGSSSA 144
                                ***********........*******************9887765155569*********9966654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.0E-653138IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MTSGTRQPTW KERENNKRRE RRRRAIAAKI FSGLRMYGNY KLPKHCDNNE VLKALCNEAG  60
WTVEPDGTTY RKGCKPVERM DVVGGSAMGS PCSSYHPSPC ASYNPSPGSS SFPSPRSSHA  120
VTPNGDANSL IPWLKNLSSG SSSASSSKHP QLFIHTGSIS APVTPPLSSP TARSSQAKAD  180
IWEDQSIRPG WGGQQNPFLP SSTPPSPGRQ VLDPDWFAGI RMPQCGPTSP TFSLVATNPF  240
GFREEVFCGS DSRMWTPGQS GTCSPAIAAG SDHTADIPMA ESISDEFAFG LVKPWEGERI  300
HEDSGSDDLE LTLGSSKTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A1e-23677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B1e-23677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C1e-23677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D1e-23677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00248DAPTransfer from AT1G78700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA13414
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2076010.0AC207601.5 Medicago truncatula chromosome 2 BAC clone mth2-45c5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003596275.11e-178BES1/BZR1 homolog protein 4 isoform X1
RefseqXP_024632258.11e-178BES1/BZR1 homolog protein 4 isoform X2
SwissprotQ9ZV881e-126BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBLA0A2Z6NVQ60.0A0A2Z6NVQ6_TRISU; Uncharacterized protein
STRINGXP_004489003.11e-177(Cicer arietinum)
STRINGAES665261e-177(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26613375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.11e-114BES1/BZR1 homolog 4