PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA13325 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | WRKY | ||||||||
Protein Properties | Length: 157aa MW: 18316.9 Da PI: 10.2263 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.2 | 2.6e-31 | 71 | 129 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG K+vk+++fprsYY+Ct++gC+vkk+++r ++++++ve+tYeg H h+ Tp57577_TGAC_v2_mRNA13325 71 LDDGFRWRKYGEKSVKNNKFPRSYYKCTYRGCNVKKQIQRHSKEEQIVETTYEGVHIHP 129 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-31 | 57 | 129 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-27 | 63 | 130 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.714 | 66 | 131 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-35 | 71 | 130 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-25 | 72 | 129 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MMERHEVIFP ISSSKDASPI DVKPGNASNI HAKKAELFLK TIRKETSKQK GGKEIMKHRY 60 VFQTRSQIDI LDDGFRWRKY GEKSVKNNKF PRSYYKCTYR GCNVKKQIQR HSKEEQIVET 120 TYEGVHIHPV EKSTESFDQI LRNFITSNQL YNVTAM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-25 | 62 | 128 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-25 | 62 | 128 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA13325 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019436367.1 | 5e-64 | PREDICTED: probable WRKY transcription factor 75 | ||||
Swissprot | Q9FYA2 | 2e-44 | WRK75_ARATH; Probable WRKY transcription factor 75 | ||||
TrEMBL | A0A2Z6LN60 | 1e-104 | A0A2Z6LN60_TRISU; Uncharacterized protein | ||||
STRING | GLYMA08G01430.1 | 3e-62 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1156 | 34 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13080.1 | 8e-47 | WRKY DNA-binding protein 75 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA13325 |