PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA13199
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 787aa    MW: 90935.6 Da    PI: 8.9817
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA13199genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.71.4e-1642132190
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkvkkek.dgkw 76 
                                +fYn++Ak++GF vr++++k +       ++ +vC +eg++  ++++       t++++r+ +++r gC+a+l v++ + +g+w
  Tp57577_TGAC_v2_mRNA13199  42 EFYNSFAKRLGFGVRVRSTKPK-------RAILVCCNEGQHMMKSSRnkeiqydTNQAKRKCSTQRSGCQASLIVSRGTtEGNW 118
                                6***************987766.......677899999988777766778999999999******************999**** PP

                       FAR1  77 evtkleleHnHela 90 
                                 + +++++HnH+++
  Tp57577_TGAC_v2_mRNA13199 119 IICSFNNDHNHDMV 132
                                ***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-1442132IPR004330FAR1 DNA binding domain
PROSITE profilePS508118.53673132IPR003657WRKY domain
PfamPF105511.0E-35249343IPR018289MULE transposase domain
PfamPF044343.0E-7530565IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.373530566IPR007527Zinc finger, SWIM-type
SMARTSM005750.0042541568IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MPVEVEISHE NISTGSYPNV SEELNSEPYI GMEFKTVEKV REFYNSFAKR LGFGVRVRST  60
KPKRAILVCC NEGQHMMKSS RNKEIQYDTN QAKRKCSTQR SGCQASLIVS RGTTEGNWII  120
CSFNNDHNHD MVSPRSVSYM RCHKRMSTAA KSLVEQFKEE GIPTGKVATI FNNGDLAFSN  180
RDCWNHIQKL RSKNLDVGDA QAVFNYCKKK QVQNPNFFYS IQCDEESRMI NFFWVDARSR  240
LAYQQFGDVI TFDTTYKTNK YSMPFAPFVG LNNHYQSILF GCALLQDESE SSFIWLFKTF  300
LEAMDGKKPV SVITDQDLAM KAALAKVFPE TRHRLCLWHI RKKFPEKLAH IYHKKSIFKR  360
DLKRCIHGSP SIQSFEEEWR RLMIEYDLDK NEWLQGLYKI RESWVPVYNR SNFFAGMNTT  420
QRSESINSFF DSFVNASTTL QEFVSKFEKA VDSRLEAEKR EDYKSRHKCR ILTTGSKLEE  480
HAGSIYTRNI FCKFQEELAK INQFTKKKIK KDGPPYIYQV SNCYDARDVY NVNIDFDTKI  540
AKCECQLYEF FGILCRHILT IFQAKGVIQI PSHFILQRWT KDANKGIEVC YTRCNFDGQT  600
STSKILRRMH AQQETKVLVD LAEDSDEIYK FIMSELSHTR MSAIAMKESN LPVDDGISPL  660
ESSQNVDQIC LSDEESEPPH IKSPHMSQTK GRKKDGDKTT QNSRLKGGLE LSLTKSLIMI  720
IVSQNLIGVT NLRRSSRLMQ LQSANPVIEK MADEASNDQQ PSKQAKTSEK KSEEKQRFSC  780
VRFFIY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA13199
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024634520.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2Z6P1T90.0A0A2Z6P1T9_TRISU; Uncharacterized protein
STRINGGLYMA15G20510.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-161FAR1-related sequence 5