PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA13145
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 331aa    MW: 36869.7 Da    PI: 6.6047
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA13145genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-1191138455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +h   Er RR+++++ f+ L  llP++   p  K +K++i+ +Av+ Ik+Lq
  Tp57577_TGAC_v2_mRNA13145  91 MHILTERERRKKMRNMFASLHALLPQL---P-SKADKSTIVDEAVKQIKNLQ 138
                                79999*********************6...3.8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-1486157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.84687137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.53E-1290142No hitNo description
Gene3DG3DSA:4.10.280.109.4E-1490151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-991138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-893143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAMSVDHDQG FHDGFLWENL SWFDLTNSDD LGESSKPKLD VKSTNQNEEI NEGEALANKK  60
RKRGGAVTRS ESNTTIGEGK DGKYRDSDHE MHILTERERR KKMRNMFASL HALLPQLPSK  120
ADKSTIVDEA VKQIKNLQQI LENLEKKKQE KLKSVSPFGS ESSSVINNSQ WHPYESREAI  180
LVDQGSSSYN NNLPTNAIVT SNPSNALLLS APPTQQVAFQ TWSSQNVVLN ICGSEAQFCI  240
CATKKPGFLT TIAFVLEKYM IDVVSANISC NGNGIFYMIM AHVSFKLAPL LFHFYIKSDS  300
VIAKQGSHQD ANSLEEIYKQ AALEIMTLIF *
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA13145
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607938.11e-140transcription factor bHLH95
TrEMBLA0A2Z6MCP31e-171A0A2Z6MCP3_TRISU; Uncharacterized protein
STRINGAES901351e-140(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47733358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.17e-38bHLH family protein