PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12943
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 317aa    MW: 36574.2 Da    PI: 7.2952
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12943genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.21.4e-32161218259
                                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                +Dgy+WrKYGqK vk+s++prsYYrCts++C vkk+vers +dp++v +tYeg+Hnh+
  Tp57577_TGAC_v2_mRNA12943 161 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCIVKKRVERSYQDPTIVMTTYEGQHNHH 218
                                8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.9E-34145220IPR003657WRKY domain
SuperFamilySSF1182901.07E-28153220IPR003657WRKY domain
PROSITE profilePS5081132.053155220IPR003657WRKY domain
SMARTSM007741.1E-36160219IPR003657WRKY domain
PfamPF031066.5E-25161218IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MANENNHNPF YQHNHHDDEL NNSNFSFPQN FQGFDPSSHS TNFTDYLHGS MDYNTLSKAF  60
DLSCSSSEMN ISSIDDNNTK KSSVGISETL NSSESSSSNE AVIQEDSTKS NKKDKQPKLG  120
CEDGDDEKSK KEKENKTKKK EKKPKEPRFA FLTKSEIDHL EDGYRWRKYG QKAVKNSPYP  180
RSYYRCTSQK CIVKKRVERS YQDPTIVMTT YEGQHNHHCP ATLRGNASSM LFSSPSLFAP  240
TSMGLEQRLH QDFLAQFLPS YTQNDIQQQM FHQNLPQILP HHQQQQQQQQ QQFQHHHDYG  300
LLQDLLPSSF PRKQEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-261532211078Probable WRKY transcription factor 4
2lex_A1e-261532211078Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12943
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4244941e-100CU424494.2 Medicago truncatula chromosome 5 clone mth2-103o8, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003617423.11e-133probable WRKY transcription factor 71
TrEMBLG7KD541e-132G7KD54_MEDTR; Putative transcription factor WRKY family
STRINGAET003821e-132(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.17e-49WRKY DNA-binding protein 71