PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12936
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 363aa    MW: 39816.2 Da    PI: 8.0905
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12936genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.84.5e-23154217259
                                --SS-EEEEEEE--TT-S.S-EEEEEE.....-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgse.fprsYYrC.....tsagCpvkkkversaedpkvveitYegeHnhe 59 
                                +Dg++WrKYGqK  k ++ +pr+YYrC     t++ Cpv+k+v+r+  d++v+++tYeg+Hnh+
  Tp57577_TGAC_v2_mRNA12936 154 SDGCRWRKYGQKISKVNPhCPRAYYRCnmglgTTTPCPVRKQVQRCCVDETVFITTYEGNHNHS 217
                                8************9977637*******444444559***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.3E-26138219IPR003657WRKY domain
SuperFamilySSF1182903.92E-21146219IPR003657WRKY domain
PROSITE profilePS5081126.395148219IPR003657WRKY domain
SMARTSM007741.8E-23153218IPR003657WRKY domain
PfamPF031062.5E-19155216IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MEGKVALQKF LQVQERLYDE NTHASIKNTV GIGCSGLSLS LNNNLEEITP QNQDHLIPEL  60
KLGWLESKVE EVKKENQILR CMLNQVTQHY ALLQTQFLIA MQQQQQLSTS PNEINNEEAK  120
ILKEEDGAIA SELASCRKKA RVSIRARSDF SLMSDGCRWR KYGQKISKVN PHCPRAYYRC  180
NMGLGTTTPC PVRKQVQRCC VDETVFITTY EGNHNHSLPQ AAKLMANTTS AALTMFLSGS  240
TSTTMSNSGL FSSSASTSLT TLYSSASSCP TITLDLTQPS TNFFKFQTPI SSNYLNYQTL  300
HGYTQQSNEG LSLSSKISTM IPSEKNLSLI DGVVAAIVKD PSIKAALDAA VSSLPPGVVL  360
QQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-20144219877Probable WRKY transcription factor 4
2lex_A6e-20144219877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12936
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006593988.11e-105probable WRKY transcription factor 47
RefseqXP_028195951.11e-105probable WRKY transcription factor 47
TrEMBLA0A2K3P9J91e-179A0A2K3P9J9_TRIPR; WRKY transcription factor 6-like protein
STRINGGLYMA13G17800.11e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139451122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-41WRKY family protein