PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA12924

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

CAMTA

Protein Properties

Length: 160aa MW: 18844.4 Da PI: 10.1684

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA12924	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	114.7	5.1e-36	24	150	3	117
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvgg......... 77 + ++rwl++ ei++iL n++k+elt +++ rp+ gsl+L++rk++ryfrkDG+ wkkkkdgkt+rE+hekLK Tp57577_TGAC_v2_mRNA12924 24 EAQHRWLRPAEICEILRNYRKFELTPNPPVRPPAGSLFLFDRKVLRYFRKDGHRWKKKKDGKTIREAHEKLKLIVsiaecrlva 107 349*******************************************************************876688888755 PP CG-1 78 .vevlycyYahseenptfqrrcywlLee...elekivlvhylev 117 ++ ++ +++ +tf+ L + +le+ivlvhy+e Tp57577_TGAC_v2_mRNA12924 108 lRSCIVTM-LVARIMKTFKGEFIGCLMSeflKLEHIVLVHYREI 150 42232222.23578888888776655541224689****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	54.073	18	156	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	6.9E-44	21	151	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	5.3E-30	24	149	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MMAQTRNHIQ NRNQQLELGE ILGEAQHRWL RPAEICEILR NYRKFELTPN PPVRPPAGSL 60 FLFDRKVLRY FRKDGHRWKK KKDGKTIREA HEKLKLIVSI AECRLVALRS CIVTMLVARI 120 MKTFKGEFIG CLMSEFLKLE HIVLVHYREI EEVCICFLL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	82	RWKKKKD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA12924

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027331355.1	1e-52	calmodulin-binding transcription activator 2-like isoform X2
Swissprot	Q6NPP4	4e-41	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	A0A2K3NQD4	2e-68	A0A2K3NQD4_TRIPR; Calmodulin-binding transcription activator 3-like protein
STRING	XP_006488760.1	1e-50	(Citrus sinensis)
STRING	GLYMA17G04310.2	1e-50	(Glycine max)
STRING	XP_006419272.1	1e-50	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21063	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	2e-43	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA12924

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]