PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA12886 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 107aa MW: 12366.1 Da PI: 9.578 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.2 | 1.1e-09 | 16 | 58 | 4 | 44 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT eE ++ da + +G++ +W +a+ +g g++ ++k ++ Tp57577_TGAC_v2_mRNA12886 16 WTREENRRFEDALAVYGPEdpnRWQHVANAVG-GKSVQEVKMHY 58 *****************99*************.********999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.2E-7 | 12 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.55E-8 | 16 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-5 | 16 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.783 | 16 | 62 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 1.6E-7 | 16 | 58 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.44E-12 | 16 | 69 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
LKKIHTNTNI IHIMGWTREE NRRFEDALAV YGPEDPNRWQ HVANAVGGKS VQEVKMHYEI 60 LKEDLIRIEH DQIPLPTYKG GAGININNGR KLFGDEQRRM RNLNIH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-19 | 16 | 106 | 11 | 93 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA12886 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013462127.2 | 5e-59 | protein RADIALIS-like 1 | ||||
Swissprot | Q1A173 | 2e-25 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A396IZP4 | 1e-57 | A0A396IZP4_MEDTR; Putative transcription factor MYB-HB-like family | ||||
STRING | GLYMA04G03360.1 | 3e-46 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15365 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 9e-28 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA12886 |