PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA12860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 187aa MW: 21180.4 Da PI: 10.0555 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.1 | 2e-22 | 16 | 62 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k+i+n++ qvtfskRrng++KKA+EL LC+a va+iifs+tgk++ Tp57577_TGAC_v2_mRNA12860 16 KKISNERSMQVTFSKRRNGLFKKAHELFALCGAYVALIIFSPTGKVF 62 68*******************************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.4E-29 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.777 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.74E-36 | 9 | 77 | No hit | No description |
SuperFamily | SSF55455 | 1.06E-26 | 9 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.5E-21 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.7E-23 | 17 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.5E-21 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.5E-21 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 187 aa Download sequence Send to blast |
MSGGKKTRGR QKIEIKKISN ERSMQVTFSK RRNGLFKKAH ELFALCGAYV ALIIFSPTGK 60 VFSIGYPDLY TVIDRYLSRV PPVNNNVRQF IEAFRSTNVR ELNAQLTLAN DALDREKRRG 120 DDLSRLCKMI EDPSWWASPV DGLNKDQLEL LKMALEELNK NIVEPNDRLE ILGAPTQTQQ 180 AQMSPP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-16 | 9 | 82 | 2 | 75 | MEF2C |
5f28_B | 4e-16 | 9 | 82 | 2 | 75 | MEF2C |
5f28_C | 4e-16 | 9 | 82 | 2 | 75 | MEF2C |
5f28_D | 4e-16 | 9 | 82 | 2 | 75 | MEF2C |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA12860 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004496799.1 | 7e-80 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2K3NHW4 | 1e-135 | A0A2K3NHW4_TRIPR; Agamous-like mads-box protein agl62-like | ||||
STRING | XP_004496799.1 | 3e-79 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-42 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA12860 |