PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12817
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 339aa    MW: 38705.5 Da    PI: 4.3298
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12817genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.2e-11176219654
                                HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                 ++ErrRR+r+N++++ Lr ++Pk +      K++  +iL  +++Y+k+L
  Tp57577_TGAC_v2_mRNA12817 176 LMAERRRRKRLNDRLSMLRAIVPKiS------KMDRTAILGDTIDYMKEL 219
                                589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.926170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-14174232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-9176219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-11176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-15177233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.32E-4177223No hitNo description
CDDcd048735.56E-4264305No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEFYDENFME ELMALRRETY EITNPSQEEN QFFSSTTNSL SFDNCFDQNS LSYLPNSSCS  60
QQLPQSYNNN DHYNNTFNEI YGSLLDESST PQILDSYYNS TVDAPFISQE DFPLSMMGEE  120
EDQSLLGEEL QNLELQTTCK MEPTQSPEMP IVFNTGTSLE RKNRAKKLQG QPSKNLMAER  180
RRRKRLNDRL SMLRAIVPKI SKMDRTAILG DTIDYMKELL EKINNLQQEI ELDSNMTSIV  240
KDVKPNEILI RNSPKFEVER SADTRVEICC AGKPGLLLST VNTLEALGLE IQQCVISCFN  300
DFTMQASCSE ELERRTMLSS EDIKQALFRS AGYGGRCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178185ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12817
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1482360.0AC148236.14 Medicago truncatula clone mth2-124l5, complete sequence.
GenBankCU4682220.0CU468222.3 M.truncatula DNA sequence from clone MTH2-182C21 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603699.10.0transcription factor bHLH93
SwissprotQ9LSL13e-81BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A2K3MXY90.0A0A2K3MXY9_TRIPR; Transcription factor bHLH93-like protein
STRINGAES739500.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.13e-83beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]