PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA12809

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 440aa MW: 48849.8 Da PI: 7.0376

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA12809	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.6	5.8e-05	327	365	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Tp57577_TGAC_v2_mRNA12809 327 RKEKLGDRIASLQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 365 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.611	315	364	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-10	325	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.22E-4	325	369	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.7E-8	329	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MESTNLHHLQ DQHHPPPPPP VSTTPYEVGG TTTTTNSWTP NFTLNNAASS FNSNNLQEDN 60 PRSYSRSSLT HKKNHMIQDL GYQHHHQWTS TDNESSHNNL DSHEFSKNSS TSTIKEEISF 120 ANFPKFTEML NYTTPNYPIL PNSTTTQMKN INNEEHKDMN ALMLKTLFTA EDFYNAQNYP 180 NQMLEGTSNN NISSQIHPSI NISNLNHYSS SAGSSSLDMN MQSLDLLTNS PTSLSQHSQD 240 HHHHHNNLGR FTTHDHENLS FGLHPMQQPT NMSSSTNSIN KPSLLSNVET KRGCTLMESK 300 ASQSQTALKK PRSSSEPRPS CPPFKVRKEK LGDRIASLQQ LVAPFGKTDT ASVLMEAIGY 360 IKFLQGQVET LSVPYMKSSQ NQNNRVMQGG SGTSDTNGEA KQDLRSRGLC LVPLSCMSYI 420 AGDGCPEVWQ QRPNFGGPA*

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MESTNLHHLQ DQHHPPPPPP VSTTPYEVGG TTTTTNSWTP NFTLNNAASS FNSNNLQEDN  60
PRSYSRSSLT HKKNHMIQDL GYQHHHQWTS TDNESSHNNL DSHEFSKNSS TSTIKEEISF  120
ANFPKFTEML NYTTPNYPIL PNSTTTQMKN INNEEHKDMN ALMLKTLFTA EDFYNAQNYP  180
NQMLEGTSNN NISSQIHPSI NISNLNHYSS SAGSSSLDMN MQSLDLLTNS PTSLSQHSQD  240
HHHHHNNLGR FTTHDHENLS FGLHPMQQPT NMSSSTNSIN KPSLLSNVET KRGCTLMESK  300
ASQSQTALKK PRSSSEPRPS CPPFKVRKEK LGDRIASLQQ LVAPFGKTDT ASVLMEAIGY  360
IKFLQGQVET LSVPYMKSSQ NQNNRVMQGG SGTSDTNGEA KQDLRSRGLC LVPLSCMSYI  420
AGDGCPEVWQ QRPNFGGPA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA12809

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013462151.1	0.0	transcription factor bHLH110 isoform X1
TrEMBL	A0A072V3D5	0.0	A0A072V3D5_MEDTR; BHLH transcription factor-like protein
STRING	XP_004500989.1	1e-141	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4045	32	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	4e-46	bHLH family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA12809