PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA12769

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

SRS

Protein Properties

Length: 248aa MW: 27436.9 Da PI: 7.7966

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA12769	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	208.1	2.3e-64	26	178	2	152
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsa 85 rsg+++CqdCGnqakkdC+h RCRtCCksrgf+C+thvkstWvpaakrrerqqq++ +s +++++ + ++++++++ + + + Tp57577_TGAC_v2_mRNA12769 26 RSGGMNCQDCGNQAKKDCTHLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERQQQHQHLSMLQQQQHFHRPKRHSHNQQGAPSLS 109 6899**********************************************99999988887766555555555556677778 PP DUF702 86 lsstklssaeskkeletsslPeevsseav.frcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGl 152 + +t ls + ++ +e ++P+evss+ v frcvrvss+d +++++aYqtav+igGhvfkGiLydqG+ Tp57577_TGAC_v2_mRNA12769 110 IPTTGLSCEYIHTWFELGQFPPEVSSPGVtFRCVRVSSLDGpDHDQCAYQTAVNIGGHVFKGILYDQGP 178 888889999999999*******9866******978899********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.3E-59	29	178	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.2E-27	31	73	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.0E-22	128	178	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
LFVEFEISLS SVEEDLVIFM IMMMRRSGGM NCQDCGNQAK KDCTHLRCRT CCKSRGFHCQ 60 THVKSTWVPA AKRRERQQQH QHLSMLQQQQ HFHRPKRHSH NQQGAPSLSI PTTGLSCEYI 120 HTWFELGQFP PEVSSPGVTF RCVRVSSLDG PDHDQCAYQT AVNIGGHVFK GILYDQGPPS 180 LYTSTAPIHE GSSGGGGHHQ PQQLDFLTAA TTATTTGISF DPSLYSAPLN AFMAAAGTQF 240 FHPQHPN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA12769

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013462189.1	1e-112	protein SHI RELATED SEQUENCE 7
Swissprot	Q9LQZ5	8e-59	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A2K3P8U5	1e-143	A0A2K3P8U5_TRIPR; Uncharacterized protein
STRING	XP_007136048.1	7e-78	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	7e-57	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA12769

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]