PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12755
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 137aa    MW: 15440.4 Da    PI: 4.8731
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12755genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.1e-10551246
                               SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                                +WT+   +++ +a ++l ++   +W + ar +g g+t +++k ++ +
  Tp57577_TGAC_v2_mRNA12755  5 SNWTAKQNKRFENALAMLEKDtpdRWQKLARAVG-GKTIEEVKRHYEM 51
                               58********************************.***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.612257IPR017884SANT domain
SMARTSM007173.3E-6355IPR001005SANT/Myb domain
SuperFamilySSF466892.78E-11660IPR009057Homeodomain-like
CDDcd001673.11E-5653No hitNo description
Gene3DG3DSA:1.10.10.603.5E-4659IPR009057Homeodomain-like
PfamPF002495.0E-7652IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MASSSNWTAK QNKRFENALA MLEKDTPDRW QKLARAVGGK TIEEVKRHYE MLVEDVKQIE  60
EGHVPLPNYT NNLVSTLMNL FQSMNSPSQL NWQANGNDPC DNVGQASLAQ ATESPECSHT  120
VTLYDLIVIL FCFCFW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-27269673RADIALIS
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12755
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4684923e-69EF468492.1 Medicago truncatula MYB transcription factor MYB114 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462122.13e-43protein RADIALIS-like 4
TrEMBLA0A2K3KKY43e-47A0A2K3KKY4_TRIPR; DnaJ subfamily c member 2-like protein
STRINGGLYMA14G08101.11e-38(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.14e-31RAD-like 6